Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J7649_RS04410 Genome accession   NZ_CP072549
Coordinates   935826..936869 (+) Length   347 a.a.
NCBI ID   WP_219309543.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930826..941869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS04380 (J7649_04380) - 931240..931905 (-) 666 WP_219309537.1 NAD(P)H-binding protein -
  J7649_RS04385 (J7649_04385) rpsT 932120..932389 (+) 270 WP_004279868.1 30S ribosomal protein S20 -
  J7649_RS16900 - 932526..932651 (-) 126 WP_267461083.1 hypothetical protein -
  J7649_RS04390 (J7649_04390) - 932893..933633 (-) 741 WP_219309539.1 histidine phosphatase family protein -
  J7649_RS04395 (J7649_04395) - 933696..934547 (-) 852 WP_005246616.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  J7649_RS04400 (J7649_04400) - 934561..935247 (+) 687 WP_004279871.1 HAD-IA family hydrolase -
  J7649_RS04405 (J7649_04405) - 935240..935680 (+) 441 WP_219309541.1 RNA-binding S4 domain-containing protein -
  J7649_RS04410 (J7649_04410) recA 935826..936869 (+) 1044 WP_219309543.1 recombinase RecA Machinery gene
  J7649_RS04415 (J7649_04415) - 936961..937578 (+) 618 WP_219309545.1 regulatory protein RecX -
  J7649_RS04425 (J7649_04425) - 938190..938987 (+) 798 WP_219309547.1 YbgF trimerization domain-containing protein -
  J7649_RS04430 (J7649_04430) lpxA 939048..939836 (-) 789 WP_219309549.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  J7649_RS04435 (J7649_04435) fabZ 939833..940318 (-) 486 WP_026055766.1 3-hydroxyacyl-ACP dehydratase FabZ -
  J7649_RS04440 (J7649_04440) lpxD 940324..941394 (-) 1071 WP_005266607.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37849.42 Da        Isoelectric Point: 5.1679

>NTDB_id=554112 J7649_RS04410 WP_219309543.1 935826..936869(+) (recA) [Acinetobacter lwoffii strain H7]
MDENKNKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDMIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEEHKEMAQTIEK
LIRDQLLTKAVVVEEDDSKEEPDFLDV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=554112 J7649_RS04410 WP_219309543.1 935826..936869(+) (recA) [Acinetobacter lwoffii strain H7]
ATGGATGAGAATAAAAACAAGGCGCTCAACGCTGCCTTAAGCCAGATTGAAAAACAGTTTGGTAAAAATACAGTAATGCG
TCTTGGTGACAATACCGTTCAGGCAGTTGAAGCCGTGTCTACAGGTTCTTTAACGCTGGATATCGCGCTCGGTATTGGTG
GTTTACCAAAAGGTCGTATCGTCGAGATCTATGGTCCTGAATCTTCAGGTAAAACCACAATGACATTGCAAGCAATTGCA
GAGTGTCAGAAAGCAGGCGGTACGTGTGCATTTATCGATGCGGAACACGCACTTGATCCTCAATATGCGCGCAAACTTGG
CGTAGATATCGACAATCTGCTGGTATCGCAACCGGATCACGGTGAACAGGCACTTGAAATTGCAGACATGCTGGTACGTT
CTGGCGCGATCGACATGATCGTTGTCGATTCTGTTGCTGCATTGACACCACGTGCCGAAATTGAAGGCGAAATGGGTGAC
TCGCATATGGGTCTGCAAGCCCGTTTGATGAGCCAGGCACTGCGTAAAATTACCGGTAATGCCAAACGCTCAAACTGTAT
GGTGATCTTCATTAACCAGATTCGTATGAAGATTGGTGTCATGTTTGGTAGCCCTGAAACCACAACTGGTGGTAACGCAC
TGAAATTCTATGCCTCTGTTCGCTTGGACATCCGTCGTATCGGCCAAGTGAAAGAAGGCGACGAGATTGTTGGTTCTGAA
ACTAAAGTCAAAGTCGTGAAAAACAAAATGGCGCCTCCGTTTAAAGAAGCATTATTCCAGATTCTTTATGGCAAAGGTGT
TAACCATCTAGGTGAATTGATCGACCTTGCTGTACAGCAAGAAATCGTGCAGAAAGCTGGTGCGTGGTATTCTTATCAAG
GCGACAAAATTGGCCAAGGTAAGAACAACACCATCCGTTATCTGGAAGAGCATAAAGAAATGGCTCAGACGATTGAAAAG
CTGATTCGCGACCAGCTGCTTACCAAAGCAGTGGTTGTTGAAGAAGACGATAGCAAGGAAGAACCTGACTTTTTAGATGT
GTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

89.655

100

0.899
  recA Acinetobacter baumannii D1279779

89.112

100

0.896
  recA Pseudomonas stutzeri DSM 10701

75.073

98.271

0.738
  recA Vibrio cholerae strain A1552

74.39

94.524

0.703
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.39

94.524

0.703
  recA Glaesserella parasuis strain SC1401

68.314

99.135

0.677
  recA Ralstonia pseudosolanacearum GMI1000

70.427

94.524

0.666
  recA Neisseria gonorrhoeae MS11

67.284

93.372

0.628
  recA Neisseria gonorrhoeae MS11

67.284

93.372

0.628
  recA Neisseria gonorrhoeae strain FA1090

67.284

93.372

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

98.847

0.614
  recA Streptococcus pneumoniae TIGR4

60.405

99.712

0.602
  recA Streptococcus pneumoniae Rx1

60.405

99.712

0.602
  recA Streptococcus pneumoniae D39

60.405

99.712

0.602
  recA Streptococcus pneumoniae R6

60.405

99.712

0.602
  recA Helicobacter pylori strain NCTC11637

63.609

94.236

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.275

96.254

0.599
  recA Helicobacter pylori 26695

63.303

94.236

0.597
  recA Streptococcus mutans UA159

59.593

99.135

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.577

93.948

0.588
  recA Streptococcus mitis NCTC 12261

61.043

93.948

0.573
  recA Streptococcus mitis SK321

61.043

93.948

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

92.795

0.573
  recA Streptococcus pyogenes NZ131

60.615

93.66

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.084

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.507

0.548