Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J5X96_RS02310 Genome accession   NZ_CP072548
Coordinates   438011..439063 (+) Length   350 a.a.
NCBI ID   WP_209364110.1    Uniprot ID   -
Organism   Aggregatibacter sp. 2125159857     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 433011..444063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X96_RS02280 (J5X96_02280) - 433346..433636 (+) 291 WP_209364100.1 hypothetical protein -
  J5X96_RS02285 (J5X96_02285) - 433817..434410 (+) 594 WP_209364749.1 sigma-70 family RNA polymerase sigma factor -
  J5X96_RS02290 (J5X96_02290) - 434407..434592 (+) 186 WP_209364102.1 zf-HC2 domain-containing protein -
  J5X96_RS02295 (J5X96_02295) - 434623..435255 (-) 633 WP_209364104.1 glucose-6-phosphate 1-dehydrogenase family protein -
  J5X96_RS02300 (J5X96_02300) - 435258..435875 (-) 618 WP_209364106.1 MarC family protein -
  J5X96_RS02305 (J5X96_02305) - 435955..437880 (+) 1926 WP_209364108.1 ABC transporter ATP-binding protein -
  J5X96_RS02310 (J5X96_02310) recA 438011..439063 (+) 1053 WP_209364110.1 recombinase RecA Machinery gene
  J5X96_RS02315 (J5X96_02315) recX 439146..439607 (+) 462 WP_209364113.1 recombination regulator RecX -
  J5X96_RS02320 (J5X96_02320) leuS 440344..442932 (-) 2589 WP_209364115.1 leucine--tRNA ligase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37710.21 Da        Isoelectric Point: 4.7664

>NTDB_id=554088 J5X96_RS02310 WP_209364110.1 438011..439063(+) (recA) [Aggregatibacter sp. 2125159857]
MATQEEKQKALDAALGQIEKQFGKGAIMKLGDSQKLDIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAEAQKAGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDM
GDSHVGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISKESELIDLGVKHKLISKAGAWYAYENEKIGQGKTNAMKWLKENPEQAKLI
ESTLRDELLAHPETAITADVEDEAAEADFE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=554088 J5X96_RS02310 WP_209364110.1 438011..439063(+) (recA) [Aggregatibacter sp. 2125159857]
ATGGCAACTCAAGAAGAAAAACAAAAAGCGCTCGACGCCGCGTTAGGTCAAATCGAAAAACAATTTGGTAAAGGCGCCAT
CATGAAATTAGGCGACAGCCAAAAATTGGATATTGAAGCGATTTCCACCGGCTCCTTCGGTCTTGACTTAGCATTAGGGA
TCGGCGGTTTGCCAATGGGACGTATCGTTGAAATTTTTGGCCCGGAATCTTCCGGTAAAACCACCTTGACGCTTTCTGTG
ATCGCTGAAGCGCAAAAAGCAGGCAAAACCTGTGCCTTTATCGATGCGGAACATGCCTTAGACCCAATTTATGCCTCTAA
ACTGGGTGTGGATGTGAAAGAGTTGTTGGTTTCTCAACCGGATAACGGTGAGCAAGCGTTAGAAATCTGTGATGCCTTAG
TGCGTTCCGGTGCCGTGGATGTGATTATTGTTGACTCCGTTGCGGCCTTAACGCCGAAAGCGGAAATCGAAGGCGACATG
GGCGATTCTCATGTGGGCTTGCAAGCGCGCCTCATGTCTCAAGCGTTGCGTAAATTAACCGGACAAATTAAAAATGCCAA
CTGCTTAGTGATTTTCATCAACCAAATTCGTATGAAGATCGGCGTGATGTTTGGTAACCCGGAAACCACTACCGGTGGTA
ATGCGCTGAAATTTTATGCCTCTGTGCGTTTGGATATTCGCCGTGTTGGCTCAATCAAAGAAGGCGATGAGGTCATTGGT
AATGAAACGCGCGTCAAAGTGGTGAAAAACAAAGTCGCACCGCCATTCCGTCAAGTGGATTTCCAAATTCTGTACGGTGA
AGGCATTTCTAAAGAAAGCGAATTGATTGATCTTGGTGTAAAACACAAACTTATCAGCAAAGCCGGTGCATGGTATGCCT
ATGAAAACGAGAAAATCGGTCAGGGTAAAACCAATGCAATGAAATGGTTAAAAGAGAATCCGGAGCAAGCGAAATTAATT
GAAAGCACTTTGCGTGATGAATTGTTAGCGCATCCGGAAACGGCCATTACCGCCGATGTTGAAGACGAAGCAGCTGAAGC
TGATTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

75.145

98.857

0.743
  recA Pseudomonas stutzeri DSM 10701

74.203

98.571

0.731
  recA Vibrio cholerae strain A1552

73.333

98.571

0.723
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.333

98.571

0.723
  recA Neisseria gonorrhoeae strain FA1090

72.141

97.429

0.703
  recA Neisseria gonorrhoeae MS11

72.141

97.429

0.703
  recA Neisseria gonorrhoeae MS11

72.141

97.429

0.703
  recA Acinetobacter baylyi ADP1

70.088

97.429

0.683
  recA Acinetobacter baumannii D1279779

69.322

96.857

0.671
  recA Ralstonia pseudosolanacearum GMI1000

72.188

91.429

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.14

98

0.629
  recA Helicobacter pylori 26695

63.473

95.429

0.606
  recA Helicobacter pylori strain NCTC11637

63.473

95.429

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

95.143

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

64.907

92

0.597
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.468

93.429

0.574
  recA Streptococcus mitis NCTC 12261

57.925

99.143

0.574
  recA Streptococcus pneumoniae D39

59.939

93.429

0.56
  recA Streptococcus pneumoniae TIGR4

59.939

93.429

0.56
  recA Streptococcus pneumoniae R6

59.939

93.429

0.56
  recA Streptococcus pneumoniae Rx1

59.939

93.429

0.56
  recA Streptococcus mutans UA159

60

92.857

0.557
  recA Streptococcus mitis SK321

60.185

92.571

0.557
  recA Streptococcus pyogenes NZ131

58.769

92.857

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

60.968

88.571

0.54
  recA Lactococcus lactis subsp. cremoris KW2

57.099

92.571

0.529