Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J5Z55_RS08785 Genome accession   NZ_CP072473
Coordinates   1715452..1716477 (-) Length   341 a.a.
NCBI ID   WP_195780531.1    Uniprot ID   -
Organism   Priestia aryabhattai strain LAD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1710452..1721477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z55_RS08765 (J5Z55_08765) - 1710806..1711612 (+) 807 WP_209151361.1 carbon-nitrogen family hydrolase -
  J5Z55_RS08770 (J5Z55_08770) - 1712179..1712730 (+) 552 WP_245210672.1 hypothetical protein -
  J5Z55_RS08775 (J5Z55_08775) speG 1713065..1713589 (-) 525 WP_013056444.1 spermidine N1-acetyltransferase -
  J5Z55_RS08780 (J5Z55_08780) - 1713765..1715087 (+) 1323 WP_209151362.1 DUF1565 domain-containing protein -
  J5Z55_RS08785 (J5Z55_08785) recA 1715452..1716477 (-) 1026 WP_195780531.1 recombinase RecA Machinery gene
  J5Z55_RS08790 (J5Z55_08790) arsC 1717096..1717518 (-) 423 WP_209151363.1 arsenate reductase (thioredoxin) -
  J5Z55_RS08795 (J5Z55_08795) - 1717543..1718841 (-) 1299 WP_209151364.1 arsenic transporter -
  J5Z55_RS08800 (J5Z55_08800) - 1718860..1719207 (-) 348 WP_209151365.1 metalloregulator ArsR/SmtB family transcription factor -
  J5Z55_RS08805 (J5Z55_08805) - 1719612..1719959 (+) 348 WP_209151366.1 metalloregulator ArsR/SmtB family transcription factor -
  J5Z55_RS08810 (J5Z55_08810) - 1719991..1720425 (+) 435 WP_209151367.1 ArsI/CadI family heavy metal resistance metalloenzyme -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37313.54 Da        Isoelectric Point: 6.1862

>NTDB_id=553656 J5Z55_RS08785 WP_195780531.1 1715452..1716477(-) (recA) [Priestia aryabhattai strain LAD]
MNDKKAALDMALKQIEKQFGTGSIIKMGEGTHTKVEASSSGSLALDIALGINGYPKGRIMEVYGPESSGKTTVSLHAIAE
VQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT
RIKVVKNKMAPPFRIAEVDIMYGEGISKEGEILDIGSEVDIVKKSGSWFAYNEERLGQGRENAKIFLKENPEIREEIRKR
IIDFKYSNNTNNDNDSEKENQ

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=553656 J5Z55_RS08785 WP_195780531.1 1715452..1716477(-) (recA) [Priestia aryabhattai strain LAD]
ATGAATGATAAAAAAGCAGCACTAGATATGGCTCTAAAACAAATTGAAAAACAATTCGGTACAGGATCAATTATTAAAAT
GGGAGAAGGCACACATACAAAAGTTGAGGCATCTAGCTCAGGCTCATTAGCTTTAGATATAGCTCTTGGAATTAATGGTT
ATCCCAAAGGAAGAATTATGGAAGTTTACGGACCCGAAAGTTCAGGTAAAACAACCGTTTCCTTACACGCAATTGCAGAA
GTACAAAAAAATGGAGGTCGAGCTGCCTTTATTGATGCTGAACACGCGCTTGATCCAGTTTATGCAAGAAAACTAGGTGT
AGATATTGATGAGTTACTGTTATCTCAACCAGATACTGGTGAACAGGCGCTTGAAATTGCTGAAGCATTAGTTAGAAGTG
GTGCTGTAGATATTATTGTTGTTGACTCAGTAGCAGCATTAGTTCCACAAAAAGAAATTGAAGGAGAAATGGGAGATTCT
CACGTAGGTCTACAAGCTCGTTTAATGTCTCAAGCTCTTCGTAAACTATCTGGAGCAATCAATAAGTCTAAAACCATCGC
TATCTTCATCAACCAAATCAGGGAGAAAGTAGGCGTTATGTTTGGAAATCCGGAAACAACGCCAGGTGGAAGAGCACTAA
AATTCTATTCTTCCGTTCGTCTTGAGGTTCGCCGCGCTGAACAACTTAAACTAGGAAATGACATAGTTGGTAATAAAACA
AGAATTAAAGTAGTCAAAAATAAAATGGCACCTCCTTTCCGCATTGCTGAAGTAGATATTATGTATGGAGAAGGTATCTC
AAAAGAAGGGGAAATCTTAGATATCGGTTCAGAAGTAGATATTGTTAAAAAGTCTGGATCTTGGTTTGCTTACAATGAAG
AACGTTTAGGACAAGGACGAGAAAATGCTAAGATTTTCTTAAAAGAAAACCCTGAAATTAGAGAAGAAATTAGAAAAAGA
ATTATTGATTTCAAATATAGTAATAATACTAACAACGATAATGATAGCGAAAAAGAAAACCAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.801

94.135

0.789
  recA Latilactobacillus sakei subsp. sakei 23K

72.5

93.842

0.68
  recA Streptococcus pneumoniae D39

69.04

94.721

0.654
  recA Streptococcus pneumoniae Rx1

69.04

94.721

0.654
  recA Streptococcus pneumoniae R6

69.04

94.721

0.654
  recA Streptococcus pneumoniae TIGR4

69.04

94.721

0.654
  recA Streptococcus mitis NCTC 12261

68.731

94.721

0.651
  recA Streptococcus mitis SK321

68.421

94.721

0.648
  recA Streptococcus mutans UA159

66.975

95.015

0.636
  recA Streptococcus pyogenes NZ131

66.975

95.015

0.636
  recA Lactococcus lactis subsp. cremoris KW2

67.085

93.548

0.628
  recA Neisseria gonorrhoeae MS11

62.099

100

0.625
  recA Neisseria gonorrhoeae strain FA1090

62.099

100

0.625
  recA Neisseria gonorrhoeae MS11

62.099

100

0.625
  recA Acinetobacter baylyi ADP1

61.337

100

0.619
  recA Acinetobacter baumannii D1279779

62.614

96.481

0.604
  recA Glaesserella parasuis strain SC1401

62.769

95.308

0.598
  recA Vibrio cholerae strain A1552

63.636

93.548

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.636

93.548

0.595
  recA Pseudomonas stutzeri DSM 10701

63.323

93.548

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.928

94.135

0.592
  recA Helicobacter pylori strain NCTC11637

62.813

93.842

0.589
  recA Helicobacter pylori 26695

62.5

93.842

0.587
  recA Ralstonia pseudosolanacearum GMI1000

64.821

90.029

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.043

95.601

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.19

94.135

0.557