Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DEIPE_RS13185 Genome accession   NC_019793
Coordinates   2703527..2704573 (-) Length   348 a.a.
NCBI ID   WP_015236467.1    Uniprot ID   L0A591
Organism   Deinococcus peraridilitoris DSM 19664     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2698527..2709573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPE_RS13155 (Deipe_2694) - 2698936..2699547 (-) 612 WP_015236461.1 deoxynucleoside kinase -
  DEIPE_RS13160 (Deipe_2695) - 2699580..2700530 (-) 951 WP_052326704.1 GNAT family N-acetyltransferase -
  DEIPE_RS13165 (Deipe_2696) - 2700597..2701688 (-) 1092 WP_245557537.1 S1C family serine protease -
  DEIPE_RS13170 (Deipe_2697) - 2701758..2701967 (-) 210 WP_015236464.1 hypothetical protein -
  DEIPE_RS13175 (Deipe_2698) - 2702158..2702943 (+) 786 WP_015236465.1 enoyl-CoA hydratase-related protein -
  DEIPE_RS13180 (Deipe_2699) - 2702953..2703213 (-) 261 WP_015236466.1 hypothetical protein -
  DEIPE_RS13185 (Deipe_2700) recA 2703527..2704573 (-) 1047 WP_015236467.1 recombinase RecA Machinery gene
  DEIPE_RS13190 (Deipe_2701) thpR 2704623..2705177 (-) 555 WP_015236468.1 RNA 2',3'-cyclic phosphodiesterase -
  DEIPE_RS13195 (Deipe_2702) - 2705174..2706316 (-) 1143 WP_157448867.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DEIPE_RS13200 (Deipe_2703) abc-f 2706472..2708076 (-) 1605 WP_157448868.1 ribosomal protection-like ABC-F family protein -
  DEIPE_RS13205 (Deipe_2704) - 2708333..2709379 (+) 1047 WP_015236471.1 GntG family PLP-dependent aldolase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37068.42 Da        Isoelectric Point: 5.1759

>NTDB_id=55095 DEIPE_RS13185 WP_015236467.1 2703527..2704573(-) (recA) [Deinococcus peraridilitoris DSM 19664]
MDKERSKAIETAMSQIEKQFGKGSIMKLGAETKLDVQTISTGSLSLDVALGVGGIPRGRITEVYGPESGGKTTLALSIAA
QAQKAGGTAAFIDAEHALDPVYARALGVNTEELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGD
SLPGLQARLMSQALRKLTAVLSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPMKSGNDAVGN
TVKIKVVKNKVAPPFQEVELALIFGKGFDQLSDLVTLASDLEIIKKSGSFYSYGDERIGQGKEKATQYIGERPEMEQEIR
DRVLAAIREGRNPTLISPPPQGDPVGEA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=55095 DEIPE_RS13185 WP_015236467.1 2703527..2704573(-) (recA) [Deinococcus peraridilitoris DSM 19664]
ATGGATAAGGAACGTTCAAAGGCCATCGAAACGGCCATGAGCCAGATCGAAAAGCAGTTCGGCAAAGGCTCGATCATGAA
ACTCGGTGCCGAAACCAAGCTCGACGTGCAGACCATCTCGACGGGCAGCCTGTCCCTCGACGTCGCCCTGGGCGTGGGCG
GCATTCCGCGTGGCCGCATCACCGAAGTCTATGGCCCCGAATCGGGTGGCAAGACCACCCTGGCGCTCTCGATTGCTGCC
CAGGCCCAGAAGGCGGGCGGCACGGCCGCCTTCATTGACGCCGAACACGCCCTCGACCCGGTGTACGCCCGCGCGCTGGG
CGTCAACACCGAAGAGCTGCTGGTGAGCCAGCCGGACAACGGCGAGCAGGCGCTGGAAATCATGGAACTGCTGGTACGCA
GCGGCGCGATTGACGTGGTGGTGGTGGACTCGGTCGCGGCCCTGACACCCCGCGCCGAAATCGAAGGTGAGATGGGCGAC
AGCCTGCCCGGTCTGCAGGCCCGCCTGATGAGTCAGGCGCTGCGTAAACTGACGGCGGTACTCAGCAAAACCGGGACTGC
TGCCATTTTCATCAATCAGGTGCGTGAAAAGATCGGCGTGATGTACGGCAACCCGGAAACCACCACGGGAGGCCGGGCCC
TCAAGTTCTACGCCTCGGTGCGCCTCGACGTGCGCAAGATCGGTCAGCCCATGAAAAGCGGCAATGACGCGGTCGGCAAC
ACCGTCAAGATCAAGGTCGTCAAGAACAAGGTCGCCCCACCCTTTCAGGAAGTCGAACTGGCCCTGATCTTCGGCAAGGG
CTTCGATCAGCTCAGCGACCTCGTGACGCTGGCGAGCGACCTCGAAATCATCAAGAAGTCGGGCAGCTTTTACAGTTACG
GCGACGAGCGCATCGGTCAGGGCAAGGAAAAAGCCACCCAGTACATCGGCGAACGCCCCGAGATGGAGCAGGAGATTCGT
GACCGTGTGCTGGCGGCCATCCGCGAAGGGCGCAATCCGACCCTGATCAGCCCTCCTCCGCAAGGGGATCCGGTCGGCGA
AGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0A591

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

90.549

94.253

0.853
  recA Glaesserella parasuis strain SC1401

64.396

92.816

0.598
  recA Acinetobacter baylyi ADP1

62.614

94.54

0.592
  recA Streptococcus pneumoniae D39

63.777

92.816

0.592
  recA Streptococcus pneumoniae TIGR4

63.777

92.816

0.592
  recA Streptococcus pneumoniae R6

63.777

92.816

0.592
  recA Streptococcus pneumoniae Rx1

63.777

92.816

0.592
  recA Acinetobacter baumannii D1279779

62.5

94.253

0.589
  recA Streptococcus mitis SK321

63.467

92.816

0.589
  recA Streptococcus mitis NCTC 12261

63.467

92.816

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

63.75

91.954

0.586
  recA Vibrio cholerae strain A1552

59.941

96.839

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.941

96.839

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

61.61

92.816

0.572
  recA Streptococcus mutans UA159

61.3

92.816

0.569
  recA Streptococcus pyogenes NZ131

61.3

92.816

0.569
  recA Ralstonia pseudosolanacearum GMI1000

60.991

92.816

0.566
  recA Neisseria gonorrhoeae strain FA1090

59.509

93.678

0.557
  recA Neisseria gonorrhoeae MS11

59.509

93.678

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.509

93.678

0.557
  recA Neisseria gonorrhoeae MS11

59.509

93.678

0.557
  recA Helicobacter pylori 26695

56.14

98.276

0.552
  recA Helicobacter pylori strain NCTC11637

56.14

98.276

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.757

95.69

0.543
  recA Pseudomonas stutzeri DSM 10701

57.798

93.966

0.543
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.75

91.954

0.54

Multiple sequence alignment