Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DEIPE_RS12790 Genome accession   NC_019793
Coordinates   2622147..2623190 (-) Length   347 a.a.
NCBI ID   WP_052326702.1    Uniprot ID   -
Organism   Deinococcus peraridilitoris DSM 19664     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2617147..2628190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPE_RS12760 (Deipe_2612) - 2618344..2618895 (+) 552 WP_015236379.1 HD domain-containing protein -
  DEIPE_RS12765 (Deipe_2613) - 2618895..2619275 (+) 381 WP_015236380.1 cupin domain-containing protein -
  DEIPE_RS12770 (Deipe_2614) - 2619285..2619569 (-) 285 WP_041231512.1 Lrp/AsnC ligand binding domain-containing protein -
  DEIPE_RS12775 (Deipe_2615) - 2619631..2619810 (-) 180 WP_015236382.1 hypothetical protein -
  DEIPE_RS12780 (Deipe_2616) - 2619881..2620858 (-) 978 WP_015236383.1 potassium channel protein -
  DEIPE_RS12785 (Deipe_2617) - 2620910..2622091 (+) 1182 WP_015236384.1 M20 family metallopeptidase -
  DEIPE_RS12790 (Deipe_2618) recA 2622147..2623190 (-) 1044 WP_052326702.1 recombinase RecA Machinery gene
  DEIPE_RS12795 (Deipe_2620) - 2623338..2623559 (+) 222 WP_015236387.1 hypothetical protein -
  DEIPE_RS12800 (Deipe_2621) - 2623588..2623782 (-) 195 WP_015236388.1 hypothetical protein -
  DEIPE_RS12805 (Deipe_2622) - 2623978..2624271 (+) 294 WP_015236389.1 hypothetical protein -
  DEIPE_RS12810 (Deipe_2623) - 2624334..2624618 (-) 285 WP_015236390.1 hypothetical protein -
  DEIPE_RS12815 (Deipe_2624) - 2624715..2625257 (-) 543 WP_015236391.1 MOSC domain-containing protein -
  DEIPE_RS12820 (Deipe_2625) - 2625493..2626692 (+) 1200 WP_015236392.1 MFS transporter -
  DEIPE_RS12825 (Deipe_2626) - 2626929..2627192 (-) 264 WP_157448859.1 hypothetical protein -
  DEIPE_RS12830 (Deipe_2627) - 2627290..2628027 (-) 738 WP_015236394.1 sporulation protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36951.45 Da        Isoelectric Point: 6.3027

>NTDB_id=55094 DEIPE_RS12790 WP_052326702.1 2622147..2623190(-) (recA) [Deinococcus peraridilitoris DSM 19664]
MSSEKRTALNAAMSQIEKQFGKGSIMMLGAETKLDLEGLPTGSLSLDVALGVGGIPKGRITEIYGPESGGKTTLALSIIA
QSQKNGGICAFIDAEHALDPLYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVIDSVAALTPRAEIEGDMGG
SLPGLHARLMSQALRKLTAILSKTGTSAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPSKVGDTAVSH
TVKVKTVKNKVAPPFKEVELTIVYGKGFDQLSDLVTLASDLEIVKKSGSFYSYGEARIGQGKEKAAQYIGERPELQEEIR
SKVMGLIKEGRASSLLKESVTDDEQVA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=55094 DEIPE_RS12790 WP_052326702.1 2622147..2623190(-) (recA) [Deinococcus peraridilitoris DSM 19664]
ATGAGCAGCGAGAAGCGTACAGCCCTGAATGCGGCCATGAGCCAGATCGAAAAGCAGTTCGGCAAAGGCTCGATCATGAT
GCTCGGAGCAGAAACCAAGCTCGACCTGGAAGGCCTTCCCACCGGCAGCCTTTCGCTTGACGTTGCCCTCGGCGTTGGCG
GCATTCCCAAGGGTCGCATCACCGAAATCTATGGCCCCGAATCGGGCGGCAAGACCACCCTGGCACTCAGCATCATCGCG
CAGTCGCAGAAAAACGGCGGCATCTGCGCCTTCATCGACGCCGAGCACGCCCTAGACCCCCTGTACGCCCGCGCGTTGGG
CGTCAACACCGACGAATTGCTGGTGAGCCAGCCGGACAACGGCGAGCAGGCGCTGGAAATCATGGAACTGCTGGTACGCA
GCGGCGCGATTGACGTGGTCGTGATCGACTCGGTCGCGGCCCTGACGCCCCGCGCCGAAATCGAAGGTGACATGGGTGGC
TCGCTGCCCGGCCTGCACGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCTATTCTCAGCAAGACGGGCACCAG
CGCCATCTTCATCAATCAGGTGCGTGAAAAGATCGGCGTGATGTACGGCAACCCGGAAACCACCACGGGAGGCCGGGCCC
TCAAGTTCTACGCCTCGGTGCGCCTCGACGTGCGCAAGATCGGTCAGCCCAGCAAAGTCGGCGACACGGCGGTTTCACAC
ACGGTCAAGGTCAAGACGGTCAAGAACAAAGTCGCCCCACCCTTCAAGGAAGTCGAGCTGACCATCGTGTACGGCAAGGG
CTTCGACCAGCTCAGCGACCTCGTGACGCTGGCGAGCGACCTCGAGATCGTCAAGAAGTCGGGCAGCTTTTACAGCTACG
GTGAAGCTCGCATCGGTCAGGGCAAGGAAAAAGCCGCCCAGTACATCGGCGAACGCCCCGAATTGCAAGAGGAAATTCGC
AGCAAGGTCATGGGGTTGATCAAAGAAGGTCGCGCCTCATCATTGCTCAAAGAAAGCGTCACGGACGACGAACAGGTCGC
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

82.371

94.813

0.781
  recA Glaesserella parasuis strain SC1401

61.357

97.695

0.599
  recA Streptococcus mitis SK321

59.654

100

0.597
  recA Acinetobacter baumannii D1279779

63.777

93.084

0.594
  recA Streptococcus pneumoniae D39

61.562

95.965

0.591
  recA Streptococcus pneumoniae Rx1

61.562

95.965

0.591
  recA Streptococcus pneumoniae R6

61.562

95.965

0.591
  recA Streptococcus pneumoniae TIGR4

61.562

95.965

0.591
  recA Streptococcus mitis NCTC 12261

61.261

95.965

0.588
  recA Acinetobacter baylyi ADP1

62.848

93.084

0.585
  recA Vibrio cholerae strain A1552

57.971

99.424

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.971

99.424

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.795

0.571
  recA Ralstonia pseudosolanacearum GMI1000

60.991

93.084

0.568
  recA Streptococcus mutans UA159

58.806

96.542

0.568
  recA Streptococcus pyogenes NZ131

60.123

93.948

0.565
  recA Neisseria gonorrhoeae MS11

59.633

94.236

0.562
  recA Neisseria gonorrhoeae strain FA1090

59.633

94.236

0.562
  recA Neisseria gonorrhoeae MS11

59.633

94.236

0.562
  recA Pseudomonas stutzeri DSM 10701

58.824

93.084

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.798

94.236

0.545
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.062

92.219

0.545
  recA Lactococcus lactis subsp. cremoris KW2

58.025

93.372

0.542
  recA Latilactobacillus sakei subsp. sakei 23K

58.125

92.219

0.536
  recA Helicobacter pylori strain NCTC11637

56.79

93.372

0.53
  recA Helicobacter pylori 26695

56.79

93.372

0.53

Multiple sequence alignment