Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J5284_RS13585 Genome accession   NZ_CP072172
Coordinates   2790116..2791201 (+) Length   361 a.a.
NCBI ID   WP_069613031.1    Uniprot ID   A0A1E4Y9W3
Organism   Rhizobium sp. AB2/73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2785116..2796201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5284_RS13570 (J5284_13575) trpS 2786881..2787900 (+) 1020 WP_069613034.1 tryptophan--tRNA ligase -
  J5284_RS13575 (J5284_13580) - 2787959..2788885 (-) 927 WP_069613033.1 pseudouridine-5'-phosphate glycosidase -
  J5284_RS13580 (J5284_13585) - 2788932..2789876 (-) 945 WP_069613032.1 carbohydrate kinase family protein -
  J5284_RS13585 (J5284_13590) recA 2790116..2791201 (+) 1086 WP_069613031.1 recombinase RecA Machinery gene
  J5284_RS13590 (J5284_13595) alaS 2791375..2794035 (+) 2661 WP_069613030.1 alanine--tRNA ligase -
  J5284_RS13595 (J5284_13600) - 2794174..2795025 (+) 852 WP_069613029.1 GyrI-like domain-containing protein -
  J5284_RS13600 (J5284_13605) - 2795072..2795698 (-) 627 WP_069613028.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38741.23 Da        Isoelectric Point: 5.0624

>NTDB_id=550911 J5284_RS13585 WP_069613031.1 2790116..2791201(+) (recA) [Rhizobium sp. AB2/73]
MSQNSLRLVEDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENAVEIETVSTGSLSLDIALGIGGLPKGRIIEIYGPES
SGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
AVKEREEVIGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKLFL
RDNPDLAREIELSLRQNAGLIADRFLQNGGPDADDGDASGE

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=550911 J5284_RS13585 WP_069613031.1 2790116..2791201(+) (recA) [Rhizobium sp. AB2/73]
ATGTCTCAGAATTCTTTGCGGCTTGTAGAGGACAAATCGGTGGATAAAAGCAAGGCACTTGAAGCGGCACTCTCTCAAAT
TGAGCGGTCGTTCGGCAAGGGCTCGATCATGAAACTCGGCTCGAACGAGAACGCGGTCGAAATCGAAACGGTTTCCACCG
GCTCTCTGAGCCTCGATATCGCTCTCGGCATTGGCGGCTTGCCGAAGGGGCGCATCATCGAAATCTACGGGCCGGAAAGC
TCGGGTAAGACGACACTGGCGCTGCAGACCATCGCAGAGGCGCAGAAGAAGGGCGGCATTTGCGCCTTTGTGGACGCGGA
ACATGCGCTCGATCCGGTCTATGCCCGCAAGCTCGGCGTCGACCTGCAAAACCTGCTGATTTCGCAGCCCGATACCGGCG
AACAGGCGCTCGAAATCACCGATACGCTGGTGCGCTCCGGCGCCATCGACGTTCTCGTCGTCGACTCCGTTGCGGCATTG
ACTCCGCGCGCCGAAATCGAAGGCGAGATGGGCGACAGCCTGCCGGGTCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCG
CAAGCTCACGGCTTCGATCTCCAAGTCCAACTGCATGGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTCATGT
TCGGTTCGCCGGAAACGACGACGGGCGGCAACGCGCTGAAGTTCTATGCCTCGGTTCGCCTCGACATCCGCCGCATCGGC
GCCGTCAAGGAGCGCGAAGAGGTGATCGGCAACCAGACGCGAGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAA
GCAGGTCGAATTCGACATCATGTATGGCGAAGGTGTTTCCAAGACCGGCGAACTGGTCGATCTCGGCGTCAAGGCCGGCA
TCGTCGAAAAGTCCGGCGCTTGGTTCTCCTATAATAGCCAACGCCTCGGCCAGGGCCGCGAAAATGCGAAACTCTTCCTG
CGCGACAATCCGGATCTCGCCCGTGAAATCGAGTTGTCGCTCCGCCAGAATGCCGGTCTCATCGCCGACCGCTTCCTGCA
GAATGGCGGTCCCGATGCCGATGATGGCGACGCCTCCGGGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E4Y9W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

72.36

89.197

0.645
  recA Acinetobacter baumannii D1279779

72.05

89.197

0.643
  recA Glaesserella parasuis strain SC1401

65.537

98.061

0.643
  recA Neisseria gonorrhoeae MS11

66.957

95.568

0.64
  recA Neisseria gonorrhoeae MS11

66.957

95.568

0.64
  recA Neisseria gonorrhoeae strain FA1090

66.957

95.568

0.64
  recA Ralstonia pseudosolanacearum GMI1000

72.381

87.258

0.632
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.807

89.197

0.632
  recA Vibrio cholerae strain A1552

70.807

89.197

0.632
  recA Pseudomonas stutzeri DSM 10701

69.782

88.92

0.62
  recA Helicobacter pylori strain NCTC11637

66.258

90.305

0.598
  recA Helicobacter pylori 26695

65.951

90.305

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

90.305

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.749

90.582

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

90.582

0.593
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

87.812

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.963

90.305

0.56
  recA Streptococcus mitis SK321

60.423

91.69

0.554
  recA Streptococcus mitis NCTC 12261

60.423

91.69

0.554
  recA Streptococcus pneumoniae Rx1

60.121

91.69

0.551
  recA Streptococcus pneumoniae D39

60.121

91.69

0.551
  recA Streptococcus pneumoniae R6

60.121

91.69

0.551
  recA Streptococcus pneumoniae TIGR4

60.121

91.69

0.551
  recA Streptococcus pyogenes NZ131

60.486

91.136

0.551
  recA Streptococcus mutans UA159

59.517

91.69

0.546
  recA Lactococcus lactis subsp. cremoris KW2

58.859

92.244

0.543