Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | J6L80_RS14165 | Genome accession | NZ_CP072118 |
| Coordinates | 3050371..3051417 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile isolate MAR286 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3003002..3059638 | 3050371..3051417 | within | 0 |
Gene organization within MGE regions
Location: 3003002..3059638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6L80_RS13930 (J6L80_13930) | - | 3003865..3004851 (-) | 987 | WP_003428154.1 | phage tail protein | - |
| J6L80_RS13935 (J6L80_13935) | - | 3004852..3005550 (-) | 699 | WP_003428156.1 | putative phage tail protein | - |
| J6L80_RS13940 (J6L80_13940) | - | 3005547..3006599 (-) | 1053 | WP_003428158.1 | baseplate J/gp47 family protein | - |
| J6L80_RS13945 (J6L80_13945) | - | 3006592..3007020 (-) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| J6L80_RS13950 (J6L80_13950) | - | 3007020..3007346 (-) | 327 | WP_003428163.1 | DUF2577 domain-containing protein | - |
| J6L80_RS13955 (J6L80_13955) | - | 3007362..3008894 (-) | 1533 | WP_003428166.1 | NlpC/P60 family protein | - |
| J6L80_RS13960 (J6L80_13960) | - | 3009176..3009592 (-) | 417 | WP_021375053.1 | phage baseplate protein | - |
| J6L80_RS13965 (J6L80_13965) | - | 3009598..3011997 (-) | 2400 | WP_003428170.1 | hypothetical protein | - |
| J6L80_RS13970 (J6L80_13970) | - | 3011997..3012164 (-) | 168 | WP_003428173.1 | hypothetical protein | - |
| J6L80_RS13975 (J6L80_13975) | - | 3012191..3012637 (-) | 447 | WP_003428176.1 | phage tail assembly chaperone | - |
| J6L80_RS13980 (J6L80_13980) | - | 3012751..3013179 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| J6L80_RS13985 (J6L80_13985) | - | 3013193..3014257 (-) | 1065 | WP_003428178.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| J6L80_RS13990 (J6L80_13990) | - | 3014262..3014705 (-) | 444 | WP_003428180.1 | phage tail terminator family protein | - |
| J6L80_RS13995 (J6L80_13995) | - | 3014954..3015394 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| J6L80_RS14000 (J6L80_14000) | - | 3015499..3015696 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| J6L80_RS14005 (J6L80_14005) | - | 3015865..3016185 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| J6L80_RS14010 (J6L80_14010) | - | 3016267..3016773 (+) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| J6L80_RS14015 (J6L80_14015) | - | 3016937..3017353 (+) | 417 | WP_003428188.1 | hypothetical protein | - |
| J6L80_RS14020 (J6L80_14020) | - | 3017474..3018229 (+) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| J6L80_RS14025 (J6L80_14025) | - | 3018372..3018800 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| J6L80_RS14030 (J6L80_14030) | - | 3019221..3019421 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| J6L80_RS14035 (J6L80_14035) | - | 3019604..3020758 (-) | 1155 | WP_021427410.1 | amidase domain-containing protein | - |
| J6L80_RS14040 (J6L80_14040) | - | 3021009..3021830 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| J6L80_RS14045 (J6L80_14045) | - | 3021906..3023294 (-) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| J6L80_RS14050 (J6L80_14050) | - | 3023429..3024187 (-) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| J6L80_RS14055 (J6L80_14055) | - | 3024189..3024905 (-) | 717 | WP_003428194.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| J6L80_RS14060 (J6L80_14060) | - | 3024907..3025614 (-) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| J6L80_RS14065 (J6L80_14065) | - | 3025730..3026266 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| J6L80_RS14070 (J6L80_14070) | - | 3026368..3027438 (-) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| J6L80_RS14075 (J6L80_14075) | - | 3027431..3028489 (-) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| J6L80_RS14080 (J6L80_14080) | - | 3028476..3028808 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| J6L80_RS14085 (J6L80_14085) | - | 3029007..3030128 (+) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| J6L80_RS14090 (J6L80_14090) | - | 3030256..3032154 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| J6L80_RS14095 (J6L80_14095) | - | 3032469..3033245 (+) | 777 | WP_003428203.1 | 3'-5' exonuclease | - |
| J6L80_RS14100 (J6L80_14100) | - | 3033337..3034089 (-) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| J6L80_RS14105 (J6L80_14105) | galT | 3034242..3035192 (-) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| J6L80_RS14110 (J6L80_14110) | - | 3035577..3036773 (+) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| J6L80_RS14115 (J6L80_14115) | - | 3036864..3038225 (-) | 1362 | WP_003428207.1 | 6-phospho-alpha-glucosidase | - |
| J6L80_RS14120 (J6L80_14120) | - | 3038364..3039116 (-) | 753 | WP_003428208.1 | MurR/RpiR family transcriptional regulator | - |
| J6L80_RS14125 (J6L80_14125) | - | 3039264..3040841 (-) | 1578 | WP_003428209.1 | PTS transporter subunit EIIC | - |
| J6L80_RS14130 (J6L80_14130) | - | 3041245..3041697 (-) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| J6L80_RS14135 (J6L80_14135) | purB | 3042008..3043453 (-) | 1446 | WP_021387804.1 | adenylosuccinate lyase | - |
| J6L80_RS14140 (J6L80_14140) | - | 3043597..3044505 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| J6L80_RS14145 (J6L80_14145) | - | 3044762..3045586 (+) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| J6L80_RS14150 (J6L80_14150) | lepB | 3045626..3046156 (+) | 531 | WP_021387803.1 | signal peptidase I | - |
| J6L80_RS14155 (J6L80_14155) | - | 3046238..3048019 (-) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| J6L80_RS14160 (J6L80_14160) | rny | 3048654..3050195 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| J6L80_RS14165 (J6L80_14165) | recA | 3050371..3051417 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| J6L80_RS14170 (J6L80_14170) | pgsA | 3051705..3052247 (-) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| J6L80_RS14175 (J6L80_14175) | rimO | 3052234..3053568 (-) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| J6L80_RS14180 (J6L80_14180) | mnmH | 3053562..3054620 (-) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| J6L80_RS14185 (J6L80_14185) | - | 3054623..3057037 (-) | 2415 | WP_003428223.1 | FtsK/SpoIIIE family DNA translocase | - |
| J6L80_RS14190 (J6L80_14190) | - | 3057160..3057894 (-) | 735 | WP_003433325.1 | ClpP family protease | - |
| J6L80_RS14195 (J6L80_14195) | dapG | 3058007..3059230 (-) | 1224 | WP_003428226.1 | aspartate kinase | - |
| J6L80_RS14200 (J6L80_14200) | - | 3059240..3059485 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=550646 J6L80_RS14165 WP_003428218.1 3050371..3051417(-) (recA) [Clostridioides difficile isolate MAR286]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=550646 J6L80_RS14165 WP_003428218.1 3050371..3051417(-) (recA) [Clostridioides difficile isolate MAR286]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.