Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J4772_RS16245 Genome accession   NZ_CP072117
Coordinates   3801902..3802966 (-) Length   354 a.a.
NCBI ID   WP_116059588.1    Uniprot ID   -
Organism   Cohnella sp. LGH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3796902..3807966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4772_RS16225 (J4772_16225) spoVS 3797742..3798002 (-) 261 WP_027084382.1 stage V sporulation protein SpoVS -
  J4772_RS16230 (J4772_16230) - 3798176..3798970 (-) 795 WP_209076167.1 TIGR00282 family metallophosphoesterase -
  J4772_RS16235 (J4772_16235) rny 3799067..3800608 (-) 1542 WP_116059723.1 ribonuclease Y -
  J4772_RS16240 (J4772_16240) - 3800876..3801820 (-) 945 WP_209076169.1 regulatory protein RecX -
  J4772_RS16245 (J4772_16245) recA 3801902..3802966 (-) 1065 WP_116059588.1 recombinase RecA Machinery gene
  J4772_RS16250 (J4772_16250) - 3803732..3804991 (-) 1260 WP_209076171.1 competence/damage-inducible protein A -
  J4772_RS16255 (J4772_16255) pgsA 3805057..3805635 (-) 579 WP_116059586.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J4772_RS16260 (J4772_16260) rimO 3805632..3806960 (-) 1329 WP_116059585.1 30S ribosomal protein S12 methylthiotransferase RimO -
  J4772_RS16265 (J4772_16265) - 3807046..3807537 (-) 492 WP_116059584.1 YajQ family cyclic di-GMP-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38185.35 Da        Isoelectric Point: 4.7651

>NTDB_id=550620 J4772_RS16245 WP_116059588.1 3801902..3802966(-) (recA) [Cohnella sp. LGH]
MSDRRAALDMALRQIEKQFGKGSVMKLGESAQRAVESVSSGVLALDIALGIGGYPRGRIIEVYGPESSGKTTVTLHAIAE
VQRAGGTAAFIDAEHALDPTYARNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDS
FVGLQARLMSQAMRKLSGAISKSKCLAIFINQLREKVGVMFGNPEVTPGGRALKFYASVRLDVRRVEAIKQGNDVVGNRT
KIKVVKNKVAPPFKQAEVDIMYGEGISKVGSIVDIGTEQEIIQKSGAWFSYNSERLGQGRENAKQYLKDNVEISDKIEKQ
IRDLLLSPAAVVNQSATSFSADEDEDDEEFAEEQ

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=550620 J4772_RS16245 WP_116059588.1 3801902..3802966(-) (recA) [Cohnella sp. LGH]
TTGTCGGATCGTCGCGCCGCATTAGACATGGCTTTGCGTCAAATCGAGAAGCAATTCGGTAAAGGTTCTGTTATGAAATT
GGGAGAAAGTGCTCAGCGTGCGGTAGAGTCAGTATCCAGCGGTGTGCTGGCGCTCGATATCGCACTCGGCATCGGCGGTT
ATCCGCGCGGGCGGATTATAGAAGTGTACGGTCCGGAATCATCGGGTAAAACGACGGTGACGCTGCACGCCATTGCGGAA
GTTCAGCGTGCGGGCGGCACGGCGGCATTCATCGACGCCGAGCATGCGCTCGATCCTACGTACGCGAGAAATTTGGGCGT
CAACATCGACGAGTTGCTGCTGTCTCAGCCGGATACGGGGGAGCAAGCGCTGGAAATCGCGGAAGCTCTCGTACGCAGCG
GCGCGGTTGACATTATCGTTGTGGACTCGGTAGCTGCACTCGTTCCGAAAGCGGAAATTGAAGGAGACATGGGCGATTCG
TTCGTCGGTTTGCAGGCGCGTTTGATGTCTCAGGCAATGCGGAAGCTGTCCGGGGCCATCAGCAAGTCGAAGTGTCTGGC
AATCTTCATTAACCAGTTGCGCGAGAAGGTTGGCGTTATGTTCGGGAATCCGGAGGTTACTCCGGGCGGACGGGCGCTGA
AGTTCTATGCGAGCGTACGTCTTGACGTGCGTCGCGTAGAGGCAATCAAGCAAGGCAACGACGTAGTGGGCAACCGGACA
AAGATCAAGGTCGTGAAAAACAAGGTGGCTCCTCCGTTTAAGCAGGCGGAAGTGGACATCATGTACGGCGAAGGGATCTC
CAAGGTCGGCAGCATCGTCGACATCGGGACCGAGCAGGAAATCATTCAGAAGAGCGGCGCTTGGTTCTCCTATAATAGCG
AACGTTTGGGTCAGGGCCGCGAGAATGCGAAGCAGTATTTGAAGGATAATGTGGAAATTTCCGACAAAATCGAAAAGCAG
ATTCGTGATCTGTTGCTTAGTCCGGCGGCTGTGGTCAACCAATCCGCAACTTCGTTCTCCGCCGACGAAGACGAAGATGA
TGAGGAATTTGCGGAAGAGCAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.424

91.243

0.743
  recA Streptococcus pneumoniae D39

66.106

100

0.667
  recA Streptococcus pneumoniae TIGR4

66.106

100

0.667
  recA Streptococcus pneumoniae R6

66.106

100

0.667
  recA Streptococcus pneumoniae Rx1

66.106

100

0.667
  recA Latilactobacillus sakei subsp. sakei 23K

72.5

90.395

0.655
  recA Streptococcus pyogenes NZ131

70.988

91.525

0.65
  recA Streptococcus mitis NCTC 12261

70.462

91.808

0.647
  recA Streptococcus mitis SK321

69.846

91.808

0.641
  recA Streptococcus mutans UA159

69.753

91.525

0.638
  recA Glaesserella parasuis strain SC1401

63.636

99.435

0.633
  recA Lactococcus lactis subsp. cremoris KW2

68.615

91.808

0.63
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.557

96.893

0.616
  recA Vibrio cholerae strain A1552

63.557

96.893

0.616
  recA Acinetobacter baylyi ADP1

62.248

98.023

0.61
  recA Pseudomonas stutzeri DSM 10701

63.529

96.045

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

92.938

0.602
  recA Ralstonia pseudosolanacearum GMI1000

63.253

93.785

0.593
  recA Acinetobacter baumannii D1279779

64.308

91.808

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.665

90.96

0.579
  recA Neisseria gonorrhoeae MS11

65.064

88.136

0.573
  recA Neisseria gonorrhoeae MS11

65.064

88.136

0.573
  recA Neisseria gonorrhoeae strain FA1090

65.064

88.136

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.043

92.09

0.562
  recA Helicobacter pylori 26695

60.559

90.96

0.551
  recA Helicobacter pylori strain NCTC11637

60.559

90.96

0.551