Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J5D21_RS00745 Genome accession   NZ_CP071982
Coordinates   156271..157314 (+) Length   347 a.a.
NCBI ID   WP_000963113.1    Uniprot ID   A0AAV3IFT1
Organism   Helicobacter pylori strain MT5135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 151271..162314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D21_RS00710 (J5D21_00710) - 151335..151553 (+) 219 WP_001876875.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  J5D21_RS00715 (J5D21_00715) ccoP 151555..152433 (+) 879 WP_209611925.1 cytochrome-c oxidase, cbb3-type subunit III -
  J5D21_RS00720 (J5D21_00720) - 152444..152650 (+) 207 WP_000670514.1 DUF4006 family protein -
  J5D21_RS00725 (J5D21_00725) - 152751..153344 (+) 594 WP_209611927.1 hypothetical protein -
  J5D21_RS00730 (J5D21_00730) - 153357..153938 (+) 582 WP_077647986.1 hypothetical protein -
  J5D21_RS00735 (J5D21_00735) - 154545..155312 (+) 768 WP_209611929.1 hypothetical protein -
  J5D21_RS00740 (J5D21_00740) - 155309..156172 (-) 864 WP_209611930.1 menaquinone biosynthesis family protein -
  J5D21_RS00745 (J5D21_00745) recA 156271..157314 (+) 1044 WP_000963113.1 recombinase RecA Machinery gene
  J5D21_RS00750 (J5D21_00750) eno 157326..158606 (+) 1281 WP_209611932.1 phosphopyruvate hydratase -
  J5D21_RS00755 (J5D21_00755) - 158599..158874 (+) 276 WP_000841059.1 hypothetical protein -
  J5D21_RS00760 (J5D21_00760) - 158891..159487 (+) 597 WP_001899182.1 AMIN domain-containing protein -
  J5D21_RS00765 (J5D21_00765) - 159492..159980 (+) 489 WP_077645240.1 shikimate kinase -
  J5D21_RS00770 (J5D21_00770) - 160001..160957 (+) 957 WP_001920498.1 PDC sensor domain-containing protein -
  J5D21_RS00775 (J5D21_00775) - 160954..162072 (-) 1119 WP_209611935.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37623.31 Da        Isoelectric Point: 5.3408

>NTDB_id=549671 J5D21_RS00745 WP_000963113.1 156271..157314(+) (recA) [Helicobacter pylori strain MT5135]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=549671 J5D21_RS00745 WP_000963113.1 156271..157314(+) (recA) [Helicobacter pylori strain MT5135]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTCTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATTTAGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAAACCACTTTAAGCTTGCACATT
ATCGCAGAATGCCAAAAAAATGGGGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGACGTGTATTATGCCAAGAG
GCTAGGCGTGGATACAGAAAATTTACTCGTTTCCCAACCAAGCACGGGCGAAGAAGCCTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCCCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCGAGGCTTATGAGCCATGCGTTAAGAAAAATCACTGGTGTCTTGCACAAGATGAA
CACTACGCTCATTTTTATCAATCAAATAAGAATGAAGATCGGCATGACGGGCTATGGGAGTCCAGAGACTACAACCGGGG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGCAACAGGGCTAAAGCCAAAGTCGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTACGGCGTGAAATTAGACATCGTGGATAAGAGCGGGGCATGGCTTA
GTTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTATTGAAAGAAGATAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATCGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

98.847

100

0.988
  recA Helicobacter pylori 26695

98.271

100

0.983
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.049

94.524

0.738
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.846

93.66

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

64.308

93.66

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.952

95.677

0.602
  recA Acinetobacter baumannii D1279779

63.303

94.236

0.597
  recA Acinetobacter baylyi ADP1

62.997

94.236

0.594
  recA Ralstonia pseudosolanacearum GMI1000

61.012

96.83

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.417

96.83

0.585
  recA Vibrio cholerae strain A1552

60.417

96.83

0.585
  recA Pseudomonas stutzeri DSM 10701

59.357

98.559

0.585
  recA Glaesserella parasuis strain SC1401

59.756

94.524

0.565
  recA Streptococcus pneumoniae D39

55.271

100

0.559
  recA Streptococcus pneumoniae Rx1

55.271

100

0.559
  recA Streptococcus pneumoniae R6

55.271

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.271

100

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

54.062

100

0.556
  recA Streptococcus pyogenes NZ131

56.97

95.101

0.542
  recA Lactococcus lactis subsp. cremoris KW2

57.143

94.813

0.542
  recA Streptococcus mitis NCTC 12261

56.839

94.813

0.539
  recA Streptococcus mitis SK321

56.535

94.813

0.536
  recA Streptococcus mutans UA159

55.389

96.254

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

93.948

0.522