Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CRI9333_RS08290 Genome accession   NC_019753
Coordinates   1954720..1955796 (-) Length   358 a.a.
NCBI ID   WP_015202716.1    Uniprot ID   K9VXB6
Organism   Crinalium epipsammum PCC 9333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1949720..1960796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRI9333_RS08270 (Cri9333_1705) - 1950931..1951197 (+) 267 WP_015202712.1 DUF3493 domain-containing protein -
  CRI9333_RS08275 (Cri9333_1706) - 1951289..1952290 (+) 1002 WP_015202713.1 glycosyltransferase -
  CRI9333_RS08280 (Cri9333_1707) - 1952458..1953228 (+) 771 WP_015202714.1 HAD family hydrolase -
  CRI9333_RS08285 (Cri9333_1708) - 1953239..1954447 (-) 1209 WP_015202715.1 NAD(P)/FAD-dependent oxidoreductase -
  CRI9333_RS08290 (Cri9333_1709) recA 1954720..1955796 (-) 1077 WP_015202716.1 recombinase RecA Machinery gene
  CRI9333_RS08295 (Cri9333_1710) xseA 1956106..1957341 (+) 1236 WP_015202717.1 exodeoxyribonuclease VII large subunit -
  CRI9333_RS08300 (Cri9333_1711) xseB 1957347..1957613 (+) 267 WP_015202718.1 exodeoxyribonuclease VII small subunit -
  CRI9333_RS08305 (Cri9333_1712) - 1957758..1958342 (+) 585 WP_015202719.1 Uma2 family endonuclease -
  CRI9333_RS08310 (Cri9333_1713) - 1958387..1959196 (-) 810 WP_015202720.1 SDR family oxidoreductase -
  CRI9333_RS08315 (Cri9333_1714) - 1959269..1960558 (-) 1290 WP_015202721.1 DNA double-strand break repair nuclease NurA -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38281.61 Da        Isoelectric Point: 5.0505

>NTDB_id=54960 CRI9333_RS08290 WP_015202716.1 1954720..1955796(-) (recA) [Crinalium epipsammum PCC 9333]
MAIEITTTSPEKQKALNLVLNQIEKSFGKGAIMRLGDATRMRVETIPTGAMTLDLALGGGLPKGRIIEIYGPESSGKTTL
ALHAIAEVQKAGGVAAFVDAEHALDPAYSAALGVDIGNLLVSQPDTGEAGLEIVDQLVRSAAVDIVVIDSVAALTPRAEI
EGDMGDTHVGLQARLMSQALRKVAGNIGKSGCTVIFLNQLRQKIGISYGNPETTTGGNALKFYASVRLDIRRIQTLKKAN
EGEYGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTVGCLVDIAEETGIITRRGAWYSYNGDNIAQGRDNTIKYMEEKPE
IAKVIEQQVRDKLDTGAVVSANSVAHVEDSEEDFSDEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=54960 CRI9333_RS08290 WP_015202716.1 1954720..1955796(-) (recA) [Crinalium epipsammum PCC 9333]
ATGGCTATCGAAATTACTACAACCAGTCCCGAAAAGCAAAAAGCCCTAAATTTAGTGCTGAACCAGATTGAAAAATCATT
TGGTAAGGGAGCCATTATGCGCTTGGGAGATGCCACCCGCATGAGGGTGGAAACAATCCCTACTGGCGCAATGACGTTAG
ATTTAGCATTAGGCGGTGGTTTACCGAAAGGGCGGATTATTGAAATATATGGTCCAGAGAGTTCTGGTAAAACCACACTA
GCTTTACACGCGATCGCAGAAGTACAAAAAGCTGGGGGTGTTGCTGCCTTCGTTGATGCAGAACACGCCCTAGATCCCGC
CTACTCTGCCGCCCTTGGTGTTGATATTGGAAATTTGTTAGTTTCCCAACCGGATACAGGCGAAGCTGGGCTAGAAATAG
TCGATCAACTTGTGCGTTCCGCAGCCGTTGATATTGTAGTTATTGACTCCGTAGCTGCATTAACACCCCGTGCTGAAATT
GAAGGTGATATGGGTGATACCCATGTCGGTTTACAAGCACGTTTAATGAGCCAAGCTTTACGGAAAGTTGCAGGTAACAT
CGGTAAATCTGGCTGTACGGTAATTTTCCTTAACCAACTACGACAAAAAATTGGTATTTCCTACGGCAACCCAGAAACTA
CAACTGGCGGTAATGCCCTGAAATTTTATGCTTCCGTGCGTTTAGATATTCGTCGCATTCAAACTTTAAAGAAAGCTAAC
GAAGGCGAATATGGTAATCGCGTTAAAGTTAAAGTTGCTAAAAATAAAGTTGCTCCTCCATTCCGCATCGCAGAATTTGA
CATTATTTTTGGCAAAGGCATTTCCACTGTTGGTTGTCTAGTTGACATTGCAGAAGAAACTGGAATCATTACTCGCCGAG
GTGCTTGGTACAGTTACAACGGTGACAACATCGCCCAAGGTCGAGATAACACGATCAAATACATGGAAGAAAAGCCTGAA
ATTGCCAAAGTAATTGAGCAGCAGGTAAGGGACAAATTAGATACCGGAGCGGTTGTTTCAGCAAATTCAGTTGCTCATGT
TGAGGATTCTGAGGAAGACTTTTCAGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9VXB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.45

95.531

0.606
  recA Acinetobacter baumannii D1279779

62.573

95.531

0.598
  recA Pseudomonas stutzeri DSM 10701

61.272

96.648

0.592
  recA Glaesserella parasuis strain SC1401

57.66

100

0.578
  recA Neisseria gonorrhoeae MS11

62.963

90.503

0.57
  recA Neisseria gonorrhoeae MS11

62.963

90.503

0.57
  recA Neisseria gonorrhoeae strain FA1090

62.963

90.503

0.57
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.575

0.564
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.661

93.017

0.564
  recA Bacillus subtilis subsp. subtilis str. 168

60.542

92.737

0.561
  recA Ralstonia pseudosolanacearum GMI1000

60.241

92.737

0.559
  recA Helicobacter pylori 26695

61.231

90.782

0.556
  recA Helicobacter pylori strain NCTC11637

61.231

90.782

0.556
  recA Streptococcus mutans UA159

56.534

98.324

0.556
  recA Streptococcus pneumoniae R6

60.245

91.341

0.55
  recA Streptococcus pneumoniae Rx1

60.245

91.341

0.55
  recA Streptococcus pneumoniae D39

60.245

91.341

0.55
  recA Streptococcus pneumoniae TIGR4

60.245

91.341

0.55
  recA Vibrio cholerae strain A1552

60.991

90.223

0.55
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.991

90.223

0.55
  recA Streptococcus mitis NCTC 12261

59.877

90.503

0.542
  recA Streptococcus mitis SK321

59.568

90.503

0.539
  recA Streptococcus pyogenes NZ131

58.716

91.341

0.536
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

89.665

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.928

92.737

0.528
  recA Lactococcus lactis subsp. cremoris KW2

58.025

90.503

0.525

Multiple sequence alignment