Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J4048_RS08605 Genome accession   NZ_CP071970
Coordinates   1732872..1733915 (+) Length   347 a.a.
NCBI ID   WP_039251470.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1727872..1738915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS08575 (J4048_08575) - 1727885..1728613 (+) 729 WP_039251477.1 SDR family oxidoreductase -
  J4048_RS08580 (J4048_08580) - 1728688..1728945 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  J4048_RS08585 (J4048_08585) - 1729073..1729864 (+) 792 WP_007409819.1 YmfK family protein -
  J4048_RS08590 (J4048_08590) - 1729883..1730779 (+) 897 WP_007409820.1 RodZ domain-containing protein -
  J4048_RS08595 (J4048_08595) pgsA 1730852..1731433 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J4048_RS08600 (J4048_08600) cinA 1731451..1732701 (+) 1251 WP_039251473.1 competence/damage-inducible protein A Machinery gene
  J4048_RS08605 (J4048_08605) recA 1732872..1733915 (+) 1044 WP_039251470.1 recombinase RecA Machinery gene
  J4048_RS08610 (J4048_08610) - 1734082..1735263 (+) 1182 WP_039251468.1 serine hydrolase domain-containing protein -
  J4048_RS08615 (J4048_08615) rny 1735556..1737115 (+) 1560 WP_003154140.1 ribonuclease Y -
  J4048_RS08620 (J4048_08620) - 1737176..1737970 (+) 795 WP_003154137.1 TIGR00282 family metallophosphoesterase -
  J4048_RS08625 (J4048_08625) spoVS 1738170..1738430 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37963.13 Da        Isoelectric Point: 4.7528

>NTDB_id=549491 J4048_RS08605 WP_039251470.1 1732872..1733915(+) (recA) [Bacillus amyloliquefaciens strain XJ5]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVTEKSEETQEEMELEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=549491 J4048_RS08605 WP_039251470.1 1732872..1733915(+) (recA) [Bacillus amyloliquefaciens strain XJ5]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAAACAATTCGGCAAAGGTTCCATCATGAAGCT
CGGAGAAAAAACGGATACAAGAATTTCAACGGTGCCAAGCGGTTCCCTTGCACTTGATACCGCTCTCGGAATAGGCGGAT
ACCCGCGCGGACGGATTATTGAAGTATACGGACCTGAAAGCTCAGGTAAAACGACTGTAGCGCTTCACGCAATCGCTGAG
GTTCAGGAAAAAGGCGGACAGGCAGCATTTATTGATGCTGAGCATGCTCTTGATCCTGTTTACGCGCAAAAGCTCGGTGT
CAATATCGAAGAGCTTCTGCTTTCTCAGCCGGATACGGGAGAGCAGGCGCTAGAGATTGCTGAAGCGCTGGTGCGAAGCG
GCGCTGTTGACATCGTAGTCGTTGACTCTGTTGCGGCGCTTGTTCCAAAAGCTGAAATTGAAGGTGACATGGGTGATTCA
CACGTCGGTTTACAGGCGCGTCTCATGTCTCAGGCGCTCCGTAAGCTTTCCGGCGCCATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAGACGACACCGGGCGGCCGCGCGCTGA
AATTCTATTCTTCCGTGCGCCTTGAAGTGCGCCGTGCCGAGCAATTAAAGCAGGGCAACGACGTGATGGGGAATAAAACG
AGAATTAAAGTCGTAAAAAACAAAGTCGCTCCTCCGTTCCGTACGGCTGAAGTGGACATTATGTACGGTGAAGGAATCTC
CAAAGAAGGGGAAATCATCGACCTTGGAACTGAACTGGATATCGTGCAAAAAAGCGGTTCGTGGTATTCTTATGAAGAAG
AACGCCTCGGTCAGGGCCGTGAAAATGCCAAGCAGTTCTTAAAAGAAAATAAAGACATCATGCTGATGATTCAGGAACAA
ATCCGTGAACATTACGGTTTGGACAATAACGGTGTTACGGAAAAATCGGAAGAAACTCAGGAAGAGATGGAATTAGAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

97.126

100

0.974
  recA Latilactobacillus sakei subsp. sakei 23K

72.595

98.847

0.718
  recA Streptococcus pneumoniae Rx1

66.474

99.712

0.663
  recA Streptococcus pneumoniae D39

66.474

99.712

0.663
  recA Streptococcus pneumoniae R6

66.474

99.712

0.663
  recA Streptococcus pneumoniae TIGR4

66.474

99.712

0.663
  recA Streptococcus mutans UA159

65.988

99.135

0.654
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Streptococcus mitis SK321

68.182

95.101

0.648
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Neisseria gonorrhoeae strain FA1090

63.478

99.424

0.631
  recA Neisseria gonorrhoeae MS11

63.478

99.424

0.631
  recA Neisseria gonorrhoeae MS11

63.478

99.424

0.631
  recA Helicobacter pylori 26695

63.265

98.847

0.625
  recA Helicobacter pylori strain NCTC11637

63.265

98.847

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.101

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.17

98.271

0.611
  recA Ralstonia pseudosolanacearum GMI1000

64.024

94.524

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Acinetobacter baylyi ADP1

60

99.424

0.597
  recA Glaesserella parasuis strain SC1401

60

99.424

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Acinetobacter baumannii D1279779

59.42

99.424

0.591
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

93.084

0.562