Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CAL6303_RS04175 Genome accession   NC_019751
Coordinates   1008541..1009623 (-) Length   360 a.a.
NCBI ID   WP_015196583.1    Uniprot ID   K9UWT6
Organism   Calothrix sp. PCC 6303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1003541..1014623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL6303_RS04160 (Cal6303_0860) - 1004688..1004879 (-) 192 WP_015196580.1 hypothetical protein -
  CAL6303_RS04165 (Cal6303_0861) - 1005248..1006855 (+) 1608 WP_015196581.1 serine/threonine-protein kinase -
  CAL6303_RS04170 (Cal6303_0862) - 1007727..1008449 (+) 723 WP_015196582.1 FHA domain-containing protein -
  CAL6303_RS04175 (Cal6303_0863) recA 1008541..1009623 (-) 1083 WP_015196583.1 recombinase RecA Machinery gene
  CAL6303_RS04180 (Cal6303_0864) - 1010152..1010451 (-) 300 WP_015196584.1 ferredoxin -
  CAL6303_RS04185 (Cal6303_0865) - 1010897..1011898 (+) 1002 WP_015196585.1 Gfo/Idh/MocA family protein -
  CAL6303_RS04190 (Cal6303_0866) - 1012184..1013752 (-) 1569 WP_015196586.1 hydantoinase B/oxoprolinase family protein -
  CAL6303_RS04195 (Cal6303_0867) - 1013881..1014162 (+) 282 Protein_858 restriction endonuclease -
  CAL6303_RS31010 - 1014156..1014365 (+) 210 Protein_859 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38477.95 Da        Isoelectric Point: 4.9814

>NTDB_id=54936 CAL6303_RS04175 WP_015196583.1 1008541..1009623(-) (recA) [Calothrix sp. PCC 6303]
MAANTTDNNAGKQKALTMVLGQIEKTFGKGTIMRLGDATRMKVETVSTGALTLDLALGGGLPKGRVIEIYGPESSGKTTV
ALHAVAEIQKTGGIAAYIDAEHALDPTYAGALGVDIANLLISQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEI
EGEMGDTHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRMKIGVSYGNPETTTGGNALKYYASVRLDIRRIQTLKKGT
EEFGNRVKVKVAKNKVAPPFRIAEFDIIFGKGVSTIGCLVDLAEETGILTRKGAWYSYKGDNISQGRDNAIKYVEEKPEL
AEEIKKLVKEKLDMGAVVSANSVGKPDPEDEEDDEELEQD

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=54936 CAL6303_RS04175 WP_015196583.1 1008541..1009623(-) (recA) [Calothrix sp. PCC 6303]
ATGGCTGCGAATACTACCGATAACAATGCAGGTAAGCAAAAAGCTCTCACCATGGTACTCGGACAAATTGAGAAAACCTT
TGGTAAGGGTACAATCATGCGTCTAGGTGATGCTACCCGGATGAAGGTGGAAACTGTCTCTACGGGAGCGCTAACTTTAG
ATTTAGCCTTGGGGGGTGGTTTACCAAAGGGTAGGGTAATTGAAATCTACGGACCAGAAAGTTCAGGGAAAACAACTGTA
GCTTTACATGCAGTTGCCGAAATCCAAAAAACTGGCGGAATTGCCGCCTACATTGATGCAGAACATGCTCTAGATCCAAC
CTATGCCGGTGCATTAGGCGTTGATATTGCAAATTTATTAATTTCCCAACCTGATACTGGAGAATCTGCCCTAGAGATTG
TAGATCAGCTAGTGCGCTCTGCTGCCGTTGATATTGTAGTTATTGATTCAGTCGCTGCACTGGTACCACGGGCAGAAATT
GAAGGGGAAATGGGTGATACTCACGTCGGCTTACAGGCACGTTTGATGAGCCAAGCTCTACGTAAGATTACTGGCAATAT
TGGTAAATCTGGTTGCACCGTCATCTTTATTAACCAGTTGCGGATGAAAATCGGTGTCAGCTATGGAAACCCAGAAACCA
CTACTGGTGGTAATGCCTTAAAATACTACGCATCAGTCCGCTTGGATATTCGTCGAATTCAAACTTTGAAAAAAGGTACT
GAAGAATTCGGCAACCGAGTTAAAGTCAAAGTTGCCAAAAATAAAGTTGCACCACCATTCAGAATCGCTGAATTTGATAT
TATTTTCGGGAAAGGGGTATCTACTATCGGCTGCTTGGTAGACTTGGCAGAAGAAACTGGGATCCTTACCCGTAAAGGTG
CATGGTATAGCTACAAAGGCGATAATATTTCTCAAGGACGTGATAACGCCATCAAATATGTAGAAGAAAAACCCGAACTA
GCAGAAGAAATCAAGAAGTTAGTTAAAGAAAAACTTGATATGGGTGCTGTAGTTTCAGCTAATTCTGTGGGTAAACCAGA
TCCAGAGGATGAAGAAGATGACGAAGAGTTAGAACAAGACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9UWT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.183

96.944

0.622
  recA Acinetobacter baumannii D1279779

64.265

96.389

0.619
  recA Ralstonia pseudosolanacearum GMI1000

66.462

90.278

0.6
  recA Pseudomonas stutzeri DSM 10701

62.682

95.278

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.483

96.667

0.575
  recA Glaesserella parasuis strain SC1401

58.739

96.944

0.569
  recA Streptococcus pneumoniae TIGR4

57.584

98.889

0.569
  recA Streptococcus pneumoniae Rx1

57.584

98.889

0.569
  recA Streptococcus pneumoniae D39

57.584

98.889

0.569
  recA Streptococcus pneumoniae R6

57.584

98.889

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

61.212

91.667

0.561
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

89.444

0.558
  recA Vibrio cholerae strain A1552

62.422

89.444

0.558
  recA Streptococcus mutans UA159

56.338

98.611

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.701

93.056

0.556
  recA Neisseria gonorrhoeae MS11

63.175

87.5

0.553
  recA Neisseria gonorrhoeae MS11

63.175

87.5

0.553
  recA Neisseria gonorrhoeae strain FA1090

63.175

87.5

0.553
  recA Helicobacter pylori strain NCTC11637

61.61

89.722

0.553
  recA Helicobacter pylori 26695

61.61

89.722

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

62.069

88.611

0.55
  recA Streptococcus mitis NCTC 12261

60.429

90.556

0.547
  recA Streptococcus mitis SK321

60.429

90.556

0.547
  recA Streptococcus pyogenes NZ131

58.896

90.556

0.533
  recA Lactococcus lactis subsp. cremoris KW2

58.182

91.667

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.53

92.222

0.531

Multiple sequence alignment