Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J5F39_RS02890 Genome accession   NZ_CP071936
Coordinates   592448..593491 (-) Length   347 a.a.
NCBI ID   WP_000952100.1    Uniprot ID   A0A0K9N5W7
Organism   Helicobacter pylori strain MTT03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 587448..598491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5F39_RS02860 - 587677..588801 (+) 1125 WP_283492153.1 glycosyltransferase family 8 protein -
  J5F39_RS02865 - 588806..589762 (-) 957 WP_283492154.1 PDC sensor domain-containing protein -
  J5F39_RS02870 - 589784..590272 (-) 489 WP_097723870.1 shikimate kinase -
  J5F39_RS02875 - 590277..590873 (-) 597 WP_014535325.1 AMIN domain-containing protein -
  J5F39_RS02880 - 590889..591164 (-) 276 WP_000146212.1 hypothetical protein -
  J5F39_RS02885 eno 591157..592437 (-) 1281 WP_283492155.1 phosphopyruvate hydratase -
  J5F39_RS02890 recA 592448..593491 (-) 1044 WP_000952100.1 recombinase RecA Machinery gene
  J5F39_RS02895 - 593589..594452 (+) 864 WP_283492156.1 menaquinone biosynthesis family protein -
  J5F39_RS02900 - 594449..595216 (-) 768 WP_283492157.1 hypothetical protein -
  J5F39_RS02905 - 595828..596409 (-) 582 WP_078262334.1 hypothetical protein -
  J5F39_RS02910 - 596421..597005 (-) 585 WP_283492158.1 hypothetical protein -
  J5F39_RS02915 - 597106..597312 (-) 207 WP_000670506.1 DUF4006 family protein -
  J5F39_RS02920 ccoP 597323..598201 (-) 879 WP_000346892.1 cytochrome-c oxidase, cbb3-type subunit III -
  J5F39_RS02925 - 598203..598421 (-) 219 WP_001860815.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37670.39 Da        Isoelectric Point: 5.5047

>NTDB_id=549286 J5F39_RS02890 WP_000952100.1 592448..593491(-) (recA) [Helicobacter pylori strain MTT03]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=549286 J5F39_RS02890 WP_000952100.1 592448..593491(-) (recA) [Helicobacter pylori strain MTT03]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCACATT
ATCGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGATGTGCATTATGCTAAGAG
ATTGGGCGTGGATACGGAAAACTTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAAATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAGATGAA
CACCACTCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGGG
GTAATGCCTTAAAATTTTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCCTCTCTCAAACAAAACGAACAGCATATC
GGTAATAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCACCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGACTATGGCGTGAAATTAGACATTGTGGATAAGAGCGGGGCATGGCTTA
GTTACCAGGATAAAAAGCTAGGGCAAGGCAGGGAAAACGCTAAAGCCCTATTGAAAGAAGACAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9N5W7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.712

100

0.997
  recA Helicobacter pylori 26695

99.712

100

0.997
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Neisseria gonorrhoeae MS11

67.077

93.66

0.628
  recA Neisseria gonorrhoeae MS11

67.077

93.66

0.628
  recA Neisseria gonorrhoeae strain FA1090

67.077

93.66

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

64.22

94.236

0.605
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

62.202

96.83

0.602
  recA Pseudomonas stutzeri DSM 10701

59.942

98.559

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.012

96.83

0.591
  recA Vibrio cholerae strain A1552

61.012

96.83

0.591
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae Rx1

56.125

100

0.568
  recA Streptococcus pneumoniae D39

56.125

100

0.568
  recA Streptococcus pneumoniae R6

56.125

100

0.568
  recA Streptococcus pneumoniae TIGR4

56.125

100

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

54.902

100

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.055

94.813

0.55
  recA Streptococcus pyogenes NZ131

57.879

95.101

0.55
  recA Streptococcus mitis NCTC 12261

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mutans UA159

56.287

96.254

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53