Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GEI7407_RS00415 Genome accession   NC_019703
Coordinates   81431..82516 (+) Length   361 a.a.
NCBI ID   WP_015170153.1    Uniprot ID   K9S342
Organism   Geitlerinema sp. PCC 7407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 76431..87516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEI7407_RS21530 (GEI7407_0076) - 77571..77750 (+) 180 WP_071880867.1 hypothetical protein -
  GEI7407_RS00400 (GEI7407_0077) - 77911..79314 (-) 1404 WP_015170150.1 phospholipid/glycerol acyltransferase -
  GEI7407_RS00405 (GEI7407_0078) xseB 79450..79722 (-) 273 WP_015170151.1 exodeoxyribonuclease VII small subunit -
  GEI7407_RS00410 (GEI7407_0079) xseA 79784..81043 (-) 1260 WP_015170152.1 exodeoxyribonuclease VII large subunit -
  GEI7407_RS00415 (GEI7407_0080) recA 81431..82516 (+) 1086 WP_015170153.1 recombinase RecA Machinery gene
  GEI7407_RS00420 (GEI7407_0081) - 82547..83377 (-) 831 WP_015170154.1 FHA domain-containing protein -
  GEI7407_RS00425 (GEI7407_0082) - 83988..84869 (-) 882 WP_015170155.1 alpha/beta fold hydrolase -
  GEI7407_RS00430 (GEI7407_0083) - 85249..85593 (-) 345 WP_015170156.1 DUF1815 family protein -
  GEI7407_RS00435 (GEI7407_0084) - 86017..86238 (-) 222 WP_015170157.1 DUF2839 domain-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38480.79 Da        Isoelectric Point: 4.8780

>NTDB_id=54842 GEI7407_RS00415 WP_015170153.1 81431..82516(+) (recA) [Geitlerinema sp. PCC 7407]
MAPKTSSENTEKQKALNLVLSQIERNFGKGSIMRLGDASRMKVETISSGAITLDLALGGGLPKGRVIEIYGPESSGKTTL
ALHAIAEVQKAGGVAAFVDAEHALDPSYSAALGVDIENLLVSQPDTGEMGLELVDQLVRSAAVDIVVVDSVAALTPRAEI
EGEMGDAQVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGISYGNPETTTGGNALKFYASVRLDIRRIQTLKKGT
EEFGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRLGCLMDLAEETGVVSRKGAWYSYNGDNIGQGRDNAIKYLEENPEL
AQTVEQLVRQKLDTGATVSANTIAPTAEDGLAEEEILEEDA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=54842 GEI7407_RS00415 WP_015170153.1 81431..82516(+) (recA) [Geitlerinema sp. PCC 7407]
ATGGCTCCCAAAACATCCTCCGAAAACACCGAAAAGCAAAAAGCCCTTAACCTTGTGCTCAGCCAAATCGAGCGCAACTT
TGGCAAGGGATCGATCATGCGCCTAGGCGATGCCAGCCGCATGAAAGTAGAGACCATCTCCAGCGGTGCCATCACCCTCG
ATCTTGCCCTCGGTGGAGGACTGCCCAAAGGGCGCGTCATCGAGATCTACGGCCCCGAAAGCTCCGGCAAAACCACCCTC
GCCCTGCACGCGATCGCCGAAGTCCAGAAAGCTGGAGGCGTCGCCGCCTTCGTCGACGCCGAGCACGCCCTCGATCCTTC
CTACTCAGCGGCCCTGGGCGTCGACATCGAGAACCTCCTGGTTTCCCAGCCCGACACCGGTGAAATGGGCCTCGAACTCG
TCGATCAGCTGGTGCGCTCCGCCGCCGTTGACATCGTCGTGGTCGACTCCGTCGCCGCCCTCACCCCCCGCGCCGAGATC
GAAGGGGAAATGGGCGACGCGCAGGTCGGCTCCCAGGCTCGCCTGATGAGCCAAGCCATGCGCAAAATCACCGGCAACAT
CGGCAAATCCGGCTGCACCGTGATTTTCCTCAACCAGCTGCGCCAAAAAATCGGCATCAGCTACGGCAACCCCGAAACAA
CCACCGGCGGCAACGCCCTCAAGTTCTACGCCTCGGTGCGCCTCGACATTCGCCGCATCCAGACCCTCAAAAAAGGCACC
GAAGAGTTTGGCATTCGCGCCAAAGTCAAAGTCGCCAAAAACAAAGTCGCCCCGCCCTTCCGGATTGCCGAATTTGACAT
CATCTTTGGCAAAGGCATCTCGCGCCTGGGCTGCCTGATGGATCTGGCCGAAGAGACCGGCGTCGTTAGCCGCAAGGGAG
CCTGGTACAGCTATAACGGCGACAACATCGGCCAGGGACGCGACAACGCCATCAAGTATCTCGAAGAGAACCCTGAGCTG
GCGCAAACCGTGGAGCAGCTGGTCCGGCAAAAGCTCGACACGGGCGCAACGGTTTCTGCCAACACCATTGCCCCAACTGC
GGAGGACGGTCTAGCCGAAGAGGAGATCCTCGAAGAAGACGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9S342

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

63.401

96.122

0.609
  recA Ralstonia pseudosolanacearum GMI1000

61.173

99.169

0.607
  recA Acinetobacter baumannii D1279779

62.757

94.46

0.593
  recA Acinetobacter baylyi ADP1

64.832

90.582

0.587
  recA Glaesserella parasuis strain SC1401

56.831

100

0.576
  recA Streptococcus pneumoniae R6

56.863

98.892

0.562
  recA Streptococcus pneumoniae Rx1

56.863

98.892

0.562
  recA Streptococcus pneumoniae D39

56.863

98.892

0.562
  recA Streptococcus pneumoniae TIGR4

56.863

98.892

0.562
  recA Helicobacter pylori 26695

58.166

96.676

0.562
  recA Helicobacter pylori strain NCTC11637

58.166

96.676

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.043

89.197

0.562
  recA Vibrio cholerae strain A1552

63.043

89.197

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

59.064

94.737

0.56
  recA Streptococcus mitis NCTC 12261

55.899

98.615

0.551
  recA Neisseria gonorrhoeae MS11

60.748

88.92

0.54
  recA Neisseria gonorrhoeae MS11

60.748

88.92

0.54
  recA Neisseria gonorrhoeae strain FA1090

60.748

88.92

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.036

93.075

0.54
  recA Bacillus subtilis subsp. subtilis str. 168

58.735

91.967

0.54
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

92.798

0.54
  recA Streptococcus mutans UA159

60

90.028

0.54
  recA Streptococcus mitis SK321

59.692

90.028

0.537
  recA Streptococcus pyogenes NZ131

57.798

90.582

0.524
  recA Lactococcus lactis subsp. cremoris KW2

56.667

91.413

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.589

91.69

0.51

Multiple sequence alignment