Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J4N45_RS16735 Genome accession   NZ_CP071850
Coordinates   3510422..3511459 (-) Length   345 a.a.
NCBI ID   WP_042473235.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3505422..3516459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS16715 (J4N45_16725) csrA 3505440..3505637 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  J4N45_RS16720 (J4N45_16730) - 3505730..3506917 (-) 1188 WP_252012617.1 aspartate kinase -
  J4N45_RS16725 (J4N45_16735) alaS 3507135..3509720 (-) 2586 WP_252012618.1 alanine--tRNA ligase -
  J4N45_RS16730 (J4N45_16740) recX 3509880..3510344 (-) 465 WP_234495110.1 recombination regulator RecX -
  J4N45_RS16735 (J4N45_16745) recA 3510422..3511459 (-) 1038 WP_042473235.1 recombinase RecA Machinery gene
  J4N45_RS16740 (J4N45_16750) pncC 3511663..3512163 (-) 501 WP_234495109.1 nicotinamide-nucleotide amidase -
  J4N45_RS16745 (J4N45_16755) mutS 3512311..3514872 (+) 2562 WP_252012619.1 DNA mismatch repair protein MutS -
  J4N45_RS16750 (J4N45_16760) - 3514959..3515759 (-) 801 WP_252012620.1 hypothetical protein -
  J4N45_RS16755 (J4N45_16765) rraB 3515870..3516283 (-) 414 WP_042473231.1 ribonuclease E inhibitor RraB -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36984.46 Da        Isoelectric Point: 5.1697

>NTDB_id=548338 J4N45_RS16735 WP_042473235.1 3510422..3511459(-) (recA) [Vibrio sp. SCSIO 43140]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIA
AAQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNRYGELVDLGVKHKLVEKAGAWYSYNGDKIGQGKANACKFLRENPEAAQAIDS
KLRELLLTPAIVEEAETGEAPAEEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=548338 J4N45_RS16735 WP_042473235.1 3510422..3511459(-) (recA) [Vibrio sp. SCSIO 43140]
ATGGACGAGAATAAACAGAAGGCGTTAGCCGCTGCATTAGGTCAGATTGAAAAACAATTTGGTAAAGGCTCAATCATGCG
CCTTGGTGATAACCGTACCATGGACGTAGAAACTATTTCAACGGGTTCACTTTCTCTCGATATCGCACTAGGTGCAGGTG
GTCTGCCTATGGGTCGTATCGTAGAGATCTACGGTCCAGAATCATCAGGTAAAACAACACTTACCCTTGAGTGTATTGCT
GCCGCTCAAAAAGCAGGTAAAACCTGTGCGTTCATCGATGCTGAGCACGCCCTAGACCCTGTCTATGCGAAGAAGCTAGG
TGTTGATATTGATGCGCTATTGGTGTCTCAGCCAGATACCGGTGAGCAAGCGCTTGAAATCTGTGACGCTCTAGCACGCT
CTGGTGCGATTGACGTGATGGTTGTCGACTCGGTTGCTGCACTAACACCAAAAGCGGAAATCGAAGGCGAAATGGGTGAC
AGCCACATGGGTCTGCAGGCTCGTATGCTTTCTCAAGCTATGCGTAAGCTTACTGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACTACCACTGGTGGTAACGCAC
TTAAGTTCTACGCATCTGTACGTCTTGATATCCGCCGCACTGGCTCTATTAAAGAAGGCGATGAGGTTGTGGGTAACGAA
ACTCGCATTAAAGTCGTTAAGAACAAGATTGCTGCACCATTCAAACAAGCAGAAACTCAGATCCTATACGGTCAGGGCTT
CAACCGCTACGGTGAGCTGGTTGACCTAGGTGTTAAGCACAAGCTGGTTGAAAAAGCAGGCGCTTGGTACAGCTACAACG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCATGTAAGTTCCTGCGTGAAAACCCAGAAGCGGCACAAGCGATTGATAGC
AAACTACGTGAGCTATTGCTAACGCCTGCGATTGTTGAAGAAGCAGAAACTGGCGAAGCGCCGGCAGAAGAGCTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

91.793

95.362

0.875
  recA Vibrio cholerae O1 biovar El Tor strain E7946

91.793

95.362

0.875
  recA Acinetobacter baylyi ADP1

73.547

99.71

0.733
  recA Pseudomonas stutzeri DSM 10701

73.256

99.71

0.73
  recA Acinetobacter baumannii D1279779

75.305

95.072

0.716
  recA Neisseria gonorrhoeae MS11

67.049

100

0.678
  recA Neisseria gonorrhoeae MS11

67.049

100

0.678
  recA Neisseria gonorrhoeae strain FA1090

67.049

100

0.678
  recA Glaesserella parasuis strain SC1401

70.679

93.913

0.664
  recA Ralstonia pseudosolanacearum GMI1000

71.746

91.304

0.655
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.882

98.551

0.6
  recA Streptococcus mutans UA159

60.117

98.841

0.594
  recA Helicobacter pylori 26695

61.846

94.203

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.305

93.043

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

93.043

0.58
  recA Helicobacter pylori strain NCTC11637

61.538

94.203

0.58
  recA Streptococcus pneumoniae D39

61.61

93.623

0.577
  recA Streptococcus pneumoniae TIGR4

61.61

93.623

0.577
  recA Streptococcus pneumoniae R6

61.61

93.623

0.577
  recA Streptococcus pneumoniae Rx1

61.61

93.623

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.942

0.574
  recA Streptococcus pyogenes NZ131

60.923

94.203

0.574
  recA Streptococcus mitis NCTC 12261

61.3

93.623

0.574
  recA Streptococcus mitis SK321

61.3

93.623

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

93.043

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.623

0.557