Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J4N39_RS02275 Genome accession   NZ_CP071848
Coordinates   451161..452201 (+) Length   346 a.a.
NCBI ID   WP_252021544.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 446161..457201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS02265 (J4N39_02265) - 449344..450411 (+) 1068 WP_252021540.1 toxic anion resistance protein -
  J4N39_RS02270 (J4N39_02270) - 450509..451006 (+) 498 WP_252021542.1 nicotinamide-nucleotide amidohydrolase family protein -
  J4N39_RS02275 (J4N39_02275) recA 451161..452201 (+) 1041 WP_252021544.1 recombinase RecA Machinery gene
  J4N39_RS02280 (J4N39_02280) recX 452425..452889 (+) 465 WP_252021545.1 recombination regulator RecX -
  J4N39_RS02285 (J4N39_02285) alaS 453137..455719 (+) 2583 WP_252021547.1 alanine--tRNA ligase -
  J4N39_RS02290 (J4N39_02290) - 455842..457026 (+) 1185 WP_252023585.1 aspartate kinase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37416.72 Da        Isoelectric Point: 4.8875

>NTDB_id=548282 J4N39_RS02275 WP_252021544.1 451161..452201(+) (recA) [Vibrio sp. SCSIO 43136]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNE
TRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANAGKYMRENTEVAQELDK
KLREMLLTTAQPEQPENGEAAQEEEF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=548282 J4N39_RS02275 WP_252021544.1 451161..452201(+) (recA) [Vibrio sp. SCSIO 43136]
ATGGACGAGAACAAACAAAAAGCGCTCGCCGCAGCGCTTGGTCAGATTGAGAAACAATTTGGTAAAGGCTCGATTATGCG
CCTTGGTGACAACCGTGCAATGGATGTAGAAACCATCTCAACTGGTTCACTTTCTCTGGATATCGCACTAGGTGCTGGCG
GCCTGCCAATGGGTCGTATTGTAGAAGTTTATGGCCCTGAATCTTCAGGTAAAACCACACTAACTCTAGAGCTTATTGCT
GCGGCGCAACGTGAAGGCAAGACCTGTGCGTTTATCGATGCAGAGCACGCTCTTGACCCAATCTACGCTCAAAAGCTTGG
CGTTGATATCGATGCACTACTGGTTTCTCAGCCGGATACCGGTGAGCAAGCTCTTGAGATCTGTGACGCACTAGCACGCT
CTGGCGCAATTGACGTAATGGTCGTTGACTCAGTGGCAGCACTTACGCCAAAAGCTGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAAGCACGTATGCTTTCTCAGGCAATGCGTAAGCTAACCGGTAACCTTAAGCAGTCAAACTGTAT
GGCTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAACCCAGAAACAACCACAGGTGGTAACGCAC
TTAAATTCTATGCATCAGTTCGTCTAGATATTCGCCGCACTGGCTCTATCAAAGAAGGTGATGAGATCGTAGGTAACGAA
ACTCGCATCAAGGTTGTGAAGAACAAGATTGCAGCACCATTTAAGCAAGCAGAAACTCAGATCATGTACGGTCAAGGTTT
CAACCGCGAAGGTGAGCTAATCGACCTAGGTGTTAAGCACAAGCTGGTTGAAAAAGCAGGCGCTTGGTACAGCTACAATG
GCGACAAGATTGGCCAAGGTAAAGCGAACGCAGGTAAGTACATGCGTGAGAATACTGAAGTTGCACAAGAACTTGATAAG
AAGCTACGTGAGATGCTGCTAACGACAGCGCAACCTGAGCAACCGGAAAATGGTGAAGCGGCTCAGGAAGAAGAGTTTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

88.857

100

0.899
  recA Vibrio cholerae O1 biovar El Tor strain E7946

88.857

100

0.899
  recA Acinetobacter baumannii D1279779

74.772

95.087

0.711
  recA Pseudomonas stutzeri DSM 10701

74.545

95.376

0.711
  recA Acinetobacter baylyi ADP1

70.809

100

0.708
  recA Glaesserella parasuis strain SC1401

70.37

93.642

0.659
  recA Neisseria gonorrhoeae MS11

68.098

94.22

0.642
  recA Neisseria gonorrhoeae MS11

68.098

94.22

0.642
  recA Neisseria gonorrhoeae strain FA1090

68.098

94.22

0.642
  recA Ralstonia pseudosolanacearum GMI1000

70.382

90.751

0.639
  recA Streptococcus pneumoniae TIGR4

58.028

100

0.595
  recA Streptococcus pneumoniae Rx1

58.028

100

0.595
  recA Streptococcus pneumoniae D39

58.028

100

0.595
  recA Streptococcus pneumoniae R6

58.028

100

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

93.642

0.584
  recA Helicobacter pylori 26695

59.412

98.266

0.584
  recA Helicobacter pylori strain NCTC11637

59.118

98.266

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.775

0.581
  recA Streptococcus mitis SK321

61.61

93.353

0.575
  recA Streptococcus mitis NCTC 12261

61.3

93.353

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.665

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

59.337

95.954

0.569
  recA Streptococcus pyogenes NZ131

60.615

93.931

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

92.775

0.566
  recA Streptococcus mutans UA159

60

93.931

0.564
  recA Lactococcus lactis subsp. cremoris KW2

59.752

93.353

0.558