Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J1M35_RS01180 Genome accession   NZ_CP071796
Coordinates   242023..243072 (+) Length   349 a.a.
NCBI ID   WP_208009319.1    Uniprot ID   A0A975H3S7
Organism   Ottowia testudinis strain 27C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 237023..248072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1M35_RS01155 (J1M35_01155) - 237220..237960 (+) 741 WP_208009314.1 SPOR domain-containing protein -
  J1M35_RS01160 (J1M35_01160) - 238236..238895 (+) 660 WP_208009315.1 glutathione S-transferase N-terminal domain-containing protein -
  J1M35_RS01165 (J1M35_01165) - 238957..240414 (-) 1458 WP_208009316.1 sensor histidine kinase -
  J1M35_RS01170 (J1M35_01170) - 240620..241294 (-) 675 WP_208009317.1 response regulator transcription factor -
  J1M35_RS01175 (J1M35_01175) - 241362..241892 (-) 531 WP_243457543.1 MarR family transcriptional regulator -
  J1M35_RS01180 (J1M35_01180) recA 242023..243072 (+) 1050 WP_208009319.1 recombinase RecA Machinery gene
  J1M35_RS01185 (J1M35_01185) recX 243164..243634 (+) 471 WP_208009320.1 recombination regulator RecX -
  J1M35_RS01190 (J1M35_01190) argC 243798..244709 (-) 912 WP_208009321.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  J1M35_RS01195 (J1M35_01195) sucC 244897..246057 (+) 1161 WP_208009322.1 ADP-forming succinate--CoA ligase subunit beta -
  J1M35_RS01200 (J1M35_01200) sucD 246172..247065 (+) 894 WP_208009323.1 succinate--CoA ligase subunit alpha -
  J1M35_RS01205 (J1M35_01205) - 247162..247872 (+) 711 WP_208009324.1 TerC family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37131.68 Da        Isoelectric Point: 5.1798

>NTDB_id=547799 J1M35_RS01180 WP_208009319.1 242023..243072(+) (recA) [Ottowia testudinis strain 27C]
MDMAVADKTEKAKALQAALSQIEKQFGKGTIMRLGEGEAIADIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTT
LTLQVIAEMQKLGGTCAFIDAEHALDTAYAEKLGVNLHDMLISQPDTGEQALEIVDSLVRSGAIDLVVIDSVAALTPKAE
IEGEMGDSLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGTIKKG
DEALGNETRVKVVKNKVAPPFKQAEFDIMFGAGISREGEIIDMGVIAKVVDKSGAWYAYNGEKIGQGRDNARDFLRENPD
LAREIENKVRESLGVAGRPAAAAAEAAEA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=547799 J1M35_RS01180 WP_208009319.1 242023..243072(+) (recA) [Ottowia testudinis strain 27C]
ATGGACATGGCCGTTGCCGACAAGACCGAAAAAGCCAAGGCCCTGCAGGCCGCGCTGTCCCAGATCGAAAAGCAGTTCGG
CAAGGGCACCATCATGCGCTTGGGCGAGGGCGAGGCCATCGCCGACATCCAGGTGGTGTCCACCGGCTCGCTGGGGCTGG
ACGTGGCGCTGGGTGTGGGCGGCCTGCCGCGCGGCCGCGTGATCGAGATCTACGGGCCTGAAAGCTCCGGCAAGACCACG
CTGACCCTACAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCATCGATGCCGAGCACGCGCTGGACAC
CGCCTACGCCGAGAAGCTGGGCGTGAACCTGCACGACATGCTGATCAGCCAGCCCGACACTGGCGAGCAGGCGCTGGAAA
TCGTCGATTCGCTGGTGCGCTCGGGCGCGATCGACCTGGTGGTGATCGACTCGGTGGCCGCGCTCACGCCCAAGGCCGAG
ATCGAAGGCGAAATGGGCGACAGCCTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACGGCCAC
CATCAAGAAGACCAACTGCACCGTCATCTTCATCAACCAGATCCGAATGAAGATCGGCGTCATGTTCGGCAGCCCCGAGA
CGACCACCGGCGGCAACGCGCTGAAGTTCTATGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCACCATCAAGAAGGGC
GACGAGGCCCTGGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGAGTTCGA
CATCATGTTCGGCGCCGGCATCTCGCGCGAAGGCGAGATCATCGACATGGGCGTGATCGCCAAGGTGGTCGACAAAAGCG
GTGCCTGGTACGCCTACAACGGCGAAAAAATCGGCCAGGGCCGAGACAACGCGCGCGACTTCCTGCGCGAGAACCCCGAT
CTGGCACGGGAGATTGAAAACAAGGTGCGAGAGTCGCTCGGCGTCGCCGGGCGACCTGCGGCGGCGGCAGCCGAAGCGGC
CGAGGCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.263

93.696

0.771
  recA Acinetobacter baumannii D1279779

69.231

96.848

0.67
  recA Pseudomonas stutzeri DSM 10701

72.136

92.55

0.668
  recA Neisseria gonorrhoeae MS11

71.472

93.41

0.668
  recA Neisseria gonorrhoeae MS11

71.472

93.41

0.668
  recA Neisseria gonorrhoeae strain FA1090

71.472

93.41

0.668
  recA Acinetobacter baylyi ADP1

68.639

96.848

0.665
  recA Vibrio cholerae strain A1552

70.588

92.55

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.588

92.55

0.653
  recA Glaesserella parasuis strain SC1401

69.753

92.837

0.648
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.487

97.135

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.565

94.269

0.628
  recA Helicobacter pylori strain NCTC11637

66.258

93.41

0.619
  recA Helicobacter pylori 26695

66.258

93.41

0.619
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

93.696

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

62.349

95.129

0.593
  recA Streptococcus mitis SK321

59.184

98.281

0.582
  recA Lactococcus lactis subsp. cremoris KW2

61.212

94.556

0.579
  recA Streptococcus pyogenes NZ131

61.398

94.269

0.579
  recA Streptococcus pneumoniae R6

60.909

94.556

0.576
  recA Streptococcus pneumoniae Rx1

60.909

94.556

0.576
  recA Streptococcus pneumoniae D39

60.909

94.556

0.576
  recA Streptococcus pneumoniae TIGR4

60.909

94.556

0.576
  recA Streptococcus mitis NCTC 12261

60.606

94.556

0.573
  recA Streptococcus mutans UA159

60.606

94.556

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

93.696

0.573