Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J2887_RS14765 Genome accession   NZ_CP071785
Coordinates   3249999..3251051 (-) Length   350 a.a.
NCBI ID   WP_227176142.1    Uniprot ID   -
Organism   Marinobacter sp. CA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3244999..3256051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2887_RS14745 (J2887_14705) - 3246066..3246605 (+) 540 WP_227171857.1 response regulator -
  J2887_RS14750 (J2887_14710) - 3246622..3247038 (-) 417 WP_227171858.1 hypothetical protein -
  J2887_RS14755 (J2887_14715) - 3247025..3249274 (-) 2250 WP_227171859.1 EAL domain-containing protein -
  J2887_RS14760 (J2887_14720) - 3249414..3249884 (-) 471 WP_227171860.1 flavodoxin family protein -
  J2887_RS14765 (J2887_14725) recA 3249999..3251051 (-) 1053 WP_227176142.1 recombinase RecA Machinery gene
  J2887_RS14770 (J2887_14730) - 3251531..3252025 (-) 495 WP_227171861.1 CinA family protein -
  J2887_RS14775 (J2887_14735) - 3252063..3252800 (-) 738 WP_227171862.1 enoyl-CoA hydratase-related protein -
  J2887_RS14780 (J2887_14740) - 3252797..3254398 (-) 1602 WP_227171863.1 fatty acyl-CoA synthetase -
  J2887_RS14785 (J2887_14745) - 3254603..3255655 (+) 1053 WP_227171864.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37743.36 Da        Isoelectric Point: 5.3423

>NTDB_id=547762 J2887_RS14765 WP_227176142.1 3249999..3251051(-) (recA) [Marinobacter sp. CA1]
MEDNRKKALGAALSQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQKQGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTGEQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGSVKNANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNE
TRVKVVKNKVSPPFRQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGKANACKFLEENLEMAHEIEA
KVRDKLMPKPVPKEKEAAAEAPSETNGELL

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=547762 J2887_RS14765 WP_227176142.1 3249999..3251051(-) (recA) [Marinobacter sp. CA1]
ATGGAAGACAACCGCAAGAAAGCACTGGGTGCGGCGCTGAGTCAGATTGAGCGCCAGTTCGGCAAGGGCGCTGTAATGAA
AATGGGCGACCAGCCGCGGGAAGCGATCCCGGCGGTGTCCACCGGTTCCCTGGGGCTGGACGTGGCGCTGGGCATTGGCG
GCCTGCCTTATGGCCGGATTGTGGAAATCTACGGTCCGGAAAGCTCCGGTAAGACCACGCTGACCCTGCAGGTGATTGCC
GAGGCCCAGAAGCAGGGCAAGACCTGTGCGTTTGTGGATGCCGAGCACGCCCTTGATCCGGTCTACGCCGAAAAACTGGG
CGTCAACGTTGACGAGCTGCTGGTGTCCCAGCCTGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTACGCT
CCAACGCGGTGGATGTGATCATTGTCGACTCAGTCGCGGCGCTGACACCGAAAGCGGAGATCGAGGGTGAGATGGGGGAT
TCCCACGTTGGTCTGCAGGCCCGTCTGATGTCCCAGGCCCTGCGTAAACTCACCGGCAGCGTCAAGAACGCCAACTGTCT
GATGGTGTTCATCAACCAGATCCGGATGAAGATTGGCGTCATGTTCGGTTCGCCGGAAACCACCACCGGCGGTAACGCGC
TCAAGTTCTACTCGTCGGTCCGTCTCGACATTCGTCGTATCGGCTCGGTGAAAGATGGCGACGAAGTGGTCGGCAACGAA
ACCCGGGTCAAGGTGGTCAAGAACAAGGTGTCACCGCCGTTCCGTCAGGCTGAGTTCCAGATCATGTACGGCAAGGGCAT
TTACCACATGGCCGAAGTGCTGGATATGGGGGTGAAGGAAGGCTTTGTTGACAAGTCCGGGGCCTGGTACGCCTACAATG
GCGACAAGATTGGCCAGGGCAAGGCCAATGCCTGCAAGTTCCTGGAAGAGAACCTGGAGATGGCCCACGAGATCGAAGCC
AAGGTTCGTGACAAGCTGATGCCCAAGCCGGTCCCGAAAGAGAAAGAGGCTGCCGCCGAAGCACCTAGCGAGACCAACGG
CGAGCTGCTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.346

93.429

0.76
  recA Glaesserella parasuis strain SC1401

70.52

98.857

0.697
  recA Acinetobacter baylyi ADP1

69.714

100

0.697
  recA Ralstonia pseudosolanacearum GMI1000

70.882

97.143

0.689
  recA Vibrio cholerae strain A1552

69.971

98

0.686
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.971

98

0.686
  recA Neisseria gonorrhoeae MS11

72.531

92.571

0.671
  recA Neisseria gonorrhoeae MS11

72.531

92.571

0.671
  recA Neisseria gonorrhoeae strain FA1090

72.531

92.571

0.671
  recA Acinetobacter baumannii D1279779

71.865

93.429

0.671
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.462

95.143

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

93.429

0.591
  recA Helicobacter pylori strain NCTC11637

60.534

96.286

0.583
  recA Helicobacter pylori 26695

60.534

96.286

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

91.714

0.58
  recA Streptococcus mutans UA159

56.98

100

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

59.159

95.143

0.563
  recA Streptococcus pyogenes NZ131

55.747

99.429

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

92.571

0.543
  recA Lactococcus lactis subsp. cremoris KW2

58.154

92.857

0.54
  recA Streptococcus pneumoniae Rx1

57.975

93.143

0.54
  recA Streptococcus pneumoniae TIGR4

57.975

93.143

0.54
  recA Streptococcus pneumoniae D39

57.975

93.143

0.54
  recA Streptococcus pneumoniae R6

57.975

93.143

0.54
  recA Streptococcus mitis NCTC 12261

57.895

92.286

0.534
  recA Streptococcus mitis SK321

57.895

92.286

0.534