Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PLE7327_RS03840 Genome accession   NC_019689
Coordinates   866641..867702 (-) Length   353 a.a.
NCBI ID   WP_015142548.1    Uniprot ID   K9T190
Organism   Pleurocapsa sp. PCC 7327     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 861641..872702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLE7327_RS03820 (Ple7327_0807) - 862322..863296 (+) 975 WP_015142544.1 GDP-mannose 4,6-dehydratase -
  PLE7327_RS03825 (Ple7327_0808) - 863494..864699 (+) 1206 WP_015142545.1 glycosyltransferase family 4 protein -
  PLE7327_RS03830 (Ple7327_0809) - 864706..865554 (-) 849 WP_015142546.1 carbohydrate ABC transporter permease -
  PLE7327_RS03835 (Ple7327_0810) - 865609..866508 (-) 900 WP_015142547.1 carbohydrate ABC transporter permease -
  PLE7327_RS03840 (Ple7327_0811) recA 866641..867702 (-) 1062 WP_015142548.1 recombinase RecA Machinery gene
  PLE7327_RS03845 (Ple7327_0812) - 868040..869056 (-) 1017 WP_015142549.1 WD40 repeat domain-containing protein -
  PLE7327_RS03850 (Ple7327_0813) - 869118..869471 (-) 354 WP_015142550.1 DUF4870 domain-containing protein -
  PLE7327_RS03855 (Ple7327_0814) pheS 869500..870507 (-) 1008 WP_015142551.1 phenylalanine--tRNA ligase subunit alpha -
  PLE7327_RS03860 (Ple7327_0815) surE 870634..871443 (+) 810 WP_015142552.1 5'/3'-nucleotidase SurE -
  PLE7327_RS03865 (Ple7327_0816) - 871515..872078 (+) 564 WP_015142553.1 DUF3727 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38015.24 Da        Isoelectric Point: 4.9504

>NTDB_id=54755 PLE7327_RS03840 WP_015142548.1 866641..867702(-) (recA) [Pleurocapsa sp. PCC 7327]
MAAITNNPDKEKALSLVLNQIERNFGKGSIMRLGDASQMRVETISSGSLTLDLALGGGLPKGRVIEIYGPESSGKTTLAL
HAIAEVQKAGGVAAFVDAEHALDPTYSEALGVDIQNLLISQPDTGEVALEIVDQLVRSTVVDIIVVDSVAALVPRAEIEG
EMGDNQVGLQARLMSKALRKIAGNISKSGCTVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGNEG
EYGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISRVGCLIDLAEQTNVVNRKGAWYSYNGENIAQGRDNAVKYLEENPEIA
NKVEQQVREKLDIGAVSFASSTSDDEEISLEDE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=54755 PLE7327_RS03840 WP_015142548.1 866641..867702(-) (recA) [Pleurocapsa sp. PCC 7327]
ATGGCTGCTATTACTAACAATCCCGATAAAGAAAAAGCACTAAGCTTAGTACTCAATCAAATCGAACGCAATTTTGGCAA
AGGTTCGATCATGCGCTTGGGAGATGCGTCTCAGATGCGAGTCGAGACGATCTCTAGCGGCTCGCTCACGTTAGATCTAG
CCTTGGGAGGCGGTTTGCCAAAAGGTCGCGTCATTGAGATTTATGGACCAGAAAGTTCTGGGAAAACAACCCTGGCACTC
CACGCGATCGCAGAAGTGCAAAAAGCTGGCGGCGTTGCCGCCTTTGTCGATGCAGAACACGCTCTCGATCCCACCTACTC
AGAAGCTTTGGGCGTGGACATTCAGAATCTGTTAATCTCTCAACCAGATACGGGAGAAGTCGCTCTAGAAATTGTCGATC
AATTAGTGCGATCGACCGTTGTCGATATTATTGTAGTTGACTCCGTGGCGGCGCTAGTCCCCAGAGCAGAAATCGAAGGA
GAAATGGGCGACAATCAGGTAGGCTTGCAAGCTCGTCTGATGAGTAAAGCCCTGCGGAAAATTGCTGGTAATATCAGTAA
ATCTGGCTGTACGGTTATTTTCCTCAACCAGCTACGCCAGAAAATTGGCGTAACCTATGGCAACCCAGAAGTGACCACGG
GAGGAACGGCACTTAAGTTTTATGCCTCCGTTCGGTTGGATATTCGTCGCATTCAAACCCTCAAAAAAGGCAACGAAGGA
GAATACGGAAACCGAGTGAAAGTCAAGGTCGCCAAGAATAAAGTTGCGCCTCCTTTCCGCATCGCAGAATTTGACATTAT
CTTCGGTAAAGGAATATCTAGAGTTGGCTGTTTGATCGATTTAGCCGAACAAACTAACGTCGTCAACCGCAAAGGAGCTT
GGTACAGCTATAACGGAGAAAATATCGCCCAAGGACGGGATAATGCCGTTAAATATTTGGAAGAAAACCCGGAAATTGCC
AACAAAGTCGAGCAGCAAGTCCGCGAAAAACTCGATATCGGAGCTGTTAGTTTTGCTTCGTCAACCAGTGACGACGAGGA
AATAAGTTTAGAAGACGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9T190

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

62.941

96.317

0.606
  recA Ralstonia pseudosolanacearum GMI1000

64.742

93.201

0.603
  recA Acinetobacter baumannii D1279779

61.739

97.734

0.603
  recA Pseudomonas stutzeri DSM 10701

64.815

91.785

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60

97.734

0.586
  recA Vibrio cholerae strain A1552

60

97.734

0.586
  recA Glaesserella parasuis strain SC1401

61.128

95.467

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

58.721

97.45

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.064

96.884

0.572
  recA Neisseria gonorrhoeae MS11

62.422

91.218

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

91.218

0.569
  recA Neisseria gonorrhoeae MS11

62.422

91.218

0.569
  recA Neisseria gonorrhoeae strain FA1090

62.422

91.218

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

93.768

0.564
  recA Helicobacter pylori strain NCTC11637

60.55

92.635

0.561
  recA Helicobacter pylori 26695

60.55

92.635

0.561
  recA Streptococcus pneumoniae Rx1

56.609

98.584

0.558
  recA Streptococcus pneumoniae R6

56.609

98.584

0.558
  recA Streptococcus pneumoniae TIGR4

56.609

98.584

0.558
  recA Streptococcus pneumoniae D39

56.609

98.584

0.558
  recA Streptococcus pyogenes NZ131

53.803

100

0.541
  recA Streptococcus mitis NCTC 12261

58.642

91.785

0.538
  recA Streptococcus mitis SK321

58.333

91.785

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.856

94.334

0.527
  recA Streptococcus mutans UA159

57.407

91.785

0.527
  recA Lactococcus lactis subsp. cremoris KW2

56.79

91.785

0.521

Multiple sequence alignment