Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J3S98_RS00470 Genome accession   NZ_CP071729
Coordinates   99625..100788 (-) Length   387 a.a.
NCBI ID   WP_011675413.1    Uniprot ID   A0A0M2ZW66
Organism   Lactococcus cremoris strain FM-YL11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 94625..105788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3S98_RS00445 (J3S98_00445) - 95209..95934 (-) 726 WP_011675418.1 hypothetical protein -
  J3S98_RS00450 (J3S98_00450) - 95952..96263 (-) 312 WP_011675417.1 DUF2129 domain-containing protein -
  J3S98_RS00455 (J3S98_00455) - 96250..96630 (-) 381 WP_011675416.1 YlbF family regulator -
  J3S98_RS00460 (J3S98_00460) - 96777..98156 (+) 1380 WP_011675415.1 amino acid permease -
  J3S98_RS00465 (J3S98_00465) - 98228..99610 (+) 1383 WP_021165879.1 amino acid permease -
  J3S98_RS00470 (J3S98_00470) recA 99625..100788 (-) 1164 WP_011675413.1 recombinase RecA Machinery gene
  J3S98_RS00475 (J3S98_00475) mutM 100941..101759 (-) 819 WP_063283895.1 DNA-formamidopyrimidine glycosylase -
  J3S98_RS00480 (J3S98_00480) asnB 101950..103542 (-) 1593 WP_011675411.1 asparagine synthase B -
  J3S98_RS00485 (J3S98_00485) era 103640..104551 (-) 912 WP_011675410.1 GTPase Era -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 41380.10 Da        Isoelectric Point: 4.9920

>NTDB_id=547271 J3S98_RS00470 WP_011675413.1 99625..100788(-) (recA) [Lactococcus cremoris strain FM-YL11]
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSV
AALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEGIIKKSGAWFAYNDEKIGQGA
EKAKNYLKEHQDVFDEIDHKVRAAHGLLDDSEVAETEEETTASKTKAKAKKEEKAVETEEIELELED

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=547271 J3S98_RS00470 WP_011675413.1 99625..100788(-) (recA) [Lactococcus cremoris strain FM-YL11]
TTGGCAACAAAGAAAAAAACAAATTTTGATGATATTACCAAAAAATATGGCGCTGAGCGTGATAAAGCATTGGCTGATGC
TCTTGCTCTGATTGAAAAAGACTTTGGGAAAGGTTCACTCATGCGTCTTGGTGAAGCAGCTAACCAAAAAGTATCAGTTG
TAAGTTCAGGTTCTCTTGCGCTTGATATTGCACTTGGTGCAGGTGGTTACCCTAAAGGTCGTATCGTTGAAATCTACGGA
CCAGAATCTTCTGGTAAAACAACAGTCGCTCTTCATGCCGTTGCAGCGGTTCAAAAAGAAGGTGGAATTGCAGCCTTTAT
CGATGCTGAAAATGCTCTTGACCCAGAATATGCAAAAGCACTCGGTGTAAATATTGATGAACTTTTGCTCTCACAACCTG
ACTATGGTGAACAAGGACTTCAAATTGCTGAAAAATTGATTACTTCTGGAGCGGTTGACTTGGTCGTTATTGACTCAGTT
GCAGCCTTGGTACCAAAGGCCGAAATTGATGGCGAAATCGGAGACAGTTCAGTTGGTCTTCAAGCACGTATGATGTCACA
AGCTATGCGTAAACTTGCAGGACATATCAACAAAACAAAAACAACAGCGATTTTCATCAACCAATTGCGTGAAAAAGTTG
GAGTGATGTTTGGTTCACCAGAAACAACTCCTGGTGGTCGTGCCTTGAAATTTTACGCCTCAGTTCGTCTTGACGTACGT
GGTTCAACAAAAATTGAAGAAGGTTCTGGAGATAACAAAACTCAAATTGGTAAAATCACCAAAATCAAAGTCGTTAAAAA
TAAAGTTGCACCACCATTTAAGGTTGCGCTTGTTGATATCATGTTTGGTGAAGGAATTTCAAGTACAGGTGAGCTTTTAA
ATATTGCTGTTGAAGAAGGCATTATTAAGAAATCTGGTGCTTGGTTTGCTTATAATGATGAGAAGATTGGTCAAGGGGCA
GAAAAAGCTAAAAACTACCTCAAAGAGCATCAAGATGTTTTTGATGAAATAGACCACAAAGTTCGGGCAGCTCATGGACT
TCTTGATGATTCAGAAGTAGCAGAAACTGAAGAAGAAACTACAGCTTCAAAAACTAAAGCAAAAGCTAAAAAAGAAGAAA
AAGCAGTAGAAACAGAAGAAATCGAACTTGAACTTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2ZW66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

100

100

1
  recA Streptococcus pneumoniae Rx1

74.805

99.483

0.744
  recA Streptococcus pneumoniae D39

74.805

99.483

0.744
  recA Streptococcus pneumoniae R6

74.805

99.483

0.744
  recA Streptococcus pneumoniae TIGR4

74.805

99.483

0.744
  recA Streptococcus mitis NCTC 12261

73.834

99.742

0.736
  recA Streptococcus mitis SK321

73.834

99.742

0.736
  recA Streptococcus mutans UA159

72.208

99.483

0.718
  recA Streptococcus pyogenes NZ131

78.674

89.664

0.705
  recA Latilactobacillus sakei subsp. sakei 23K

69.096

88.63

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

65.758

85.271

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.486

85.013

0.514
  recA Glaesserella parasuis strain SC1401

57.558

88.889

0.512
  recA Vibrio cholerae strain A1552

60.991

83.463

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.991

83.463

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.891

88.114

0.501
  recA Ralstonia pseudosolanacearum GMI1000

58.841

84.755

0.499
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

84.238

0.496
  recA Acinetobacter baylyi ADP1

59.443

83.463

0.496
  recA Neisseria gonorrhoeae MS11

60.377

82.171

0.496
  recA Neisseria gonorrhoeae strain FA1090

60.377

82.171

0.496
  recA Neisseria gonorrhoeae MS11

60.377

82.171

0.496
  recA Helicobacter pylori 26695

58.055

85.013

0.494
  recA Helicobacter pylori strain NCTC11637

58.055

85.013

0.494
  recA Acinetobacter baumannii D1279779

58.824

83.463

0.491
  recA Pseudomonas stutzeri DSM 10701

58.025

83.721

0.486