Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SYN6312_RS02555 Genome accession   NC_019680
Coordinates   535812..536873 (+) Length   353 a.a.
NCBI ID   WP_015123301.1    Uniprot ID   K9RRN9
Organism   Synechococcus sp. PCC 6312     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 530812..541873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYN6312_RS02525 (Syn6312_0527) - 531595..532164 (-) 570 WP_015123297.1 phosphoribosyltransferase -
  SYN6312_RS02530 (Syn6312_0528) - 532299..532667 (+) 369 WP_015123298.1 hypothetical protein -
  SYN6312_RS20695 - 532736..532870 (+) 135 WP_256377485.1 hypothetical protein -
  SYN6312_RS02540 (Syn6312_0529) - 533097..533624 (-) 528 WP_156804729.1 hypothetical protein -
  SYN6312_RS02545 (Syn6312_0530) prfA 533757..534851 (-) 1095 WP_015123299.1 peptide chain release factor 1 -
  SYN6312_RS02550 (Syn6312_0531) rpsD 534877..535485 (-) 609 WP_015123300.1 30S ribosomal protein S4 -
  SYN6312_RS02555 (Syn6312_0532) recA 535812..536873 (+) 1062 WP_015123301.1 recombinase RecA Machinery gene
  SYN6312_RS02560 (Syn6312_0533) - 536855..537808 (-) 954 WP_015123302.1 glycosyltransferase family 2 protein -
  SYN6312_RS02565 (Syn6312_0534) - 538055..538354 (-) 300 WP_015123303.1 DUF3155 domain-containing protein -
  SYN6312_RS20050 (Syn6312_0535) - 538606..538779 (+) 174 WP_015123304.1 hypothetical protein -
  SYN6312_RS02570 (Syn6312_0536) - 538841..539236 (+) 396 WP_015123305.1 hypothetical protein -
  SYN6312_RS20265 (Syn6312_0537) - 539356..539781 (+) 426 Protein_516 DUF6155 family protein -
  SYN6312_RS02580 (Syn6312_0538) - 539867..540835 (-) 969 WP_015123306.1 heme o synthase -
  SYN6312_RS02585 (Syn6312_0539) - 540872..541834 (-) 963 WP_015123307.1 heme A synthase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37810.05 Da        Isoelectric Point: 5.5160

>NTDB_id=54685 SYN6312_RS02555 WP_015123301.1 535812..536873(+) (recA) [Synechococcus sp. PCC 6312]
MADVASSPEKQKALNLVVNQIEKSFGKGSIMRLGDATRMRVETTPTGALTLDLALGGGIPRGRVIEIYGPESSGKTTLAL
HAVAEIQKAGGVAAFVDAEHALDPTYAAALGVDIENLLVAQPDTGEAGLEIVDQLVRSTAVDVVVVDSVAALVPRAEIEG
EMGDTHVGLQARLMSQALRKITGNIGKTGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRVQTLKKGTEE
FGIRAKVKVAKNKVAPPFRVAEFDVIFGKGISSLGCIVDMAEETNVITRRGAWYSYEGDNIAQGRDNTIKYLEDNPEFAR
KVENLVREKLDKGAVVSANSVAHPHDEAQVEED

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=54685 SYN6312_RS02555 WP_015123301.1 535812..536873(+) (recA) [Synechococcus sp. PCC 6312]
ATGGCAGATGTGGCAAGCAGTCCTGAGAAGCAAAAAGCCCTCAACTTAGTTGTCAACCAAATCGAAAAAAGTTTTGGTAA
AGGCAGCATTATGCGGCTGGGAGATGCCACTCGCATGAGGGTGGAAACCACTCCCACCGGGGCTTTAACCTTAGATTTGG
CCTTGGGCGGTGGGATTCCCCGCGGGCGTGTCATCGAAATCTATGGGCCAGAAAGTTCCGGGAAAACAACCCTCGCCCTG
CACGCCGTGGCCGAAATTCAAAAAGCCGGGGGAGTGGCCGCCTTTGTAGATGCAGAACACGCCTTGGATCCAACCTATGC
TGCGGCTCTGGGAGTAGATATTGAAAACCTCCTGGTGGCCCAACCCGATACGGGGGAAGCGGGCCTGGAAATTGTCGATC
AACTGGTGCGCTCAACGGCTGTGGATGTGGTGGTGGTGGACTCGGTGGCAGCCCTAGTTCCACGGGCAGAAATTGAAGGC
GAAATGGGGGATACCCACGTTGGCCTCCAGGCCCGATTGATGAGCCAGGCCCTGCGAAAAATTACGGGGAATATCGGTAA
AACTGGCTGCACCGTGATTTTCTTAAACCAACTCCGGCAGAAAATTGGCGTCACCTATGGGAATCCCGAAACCACGACGG
GGGGTAACGCCCTCAAGTTCTATGCTTCGGTACGCTTAGATATTCGCCGAGTCCAGACCCTTAAAAAAGGCACAGAAGAA
TTTGGAATTCGAGCCAAGGTCAAAGTGGCTAAAAACAAGGTCGCTCCCCCCTTCCGCGTTGCTGAGTTCGATGTCATCTT
TGGGAAGGGCATTTCCAGCCTCGGCTGCATTGTTGATATGGCCGAAGAAACCAATGTCATCACAAGGCGCGGGGCCTGGT
ACAGCTATGAGGGAGATAATATTGCCCAAGGCCGGGACAATACGATCAAATACCTCGAAGATAATCCCGAGTTTGCTCGG
AAAGTGGAGAACCTAGTGCGAGAAAAACTGGATAAAGGGGCTGTAGTTTCGGCAAATTCCGTCGCCCATCCCCATGATGA
AGCTCAAGTAGAGGAAGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9RRN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

61.739

97.734

0.603
  recA Pseudomonas stutzeri DSM 10701

60.87

97.734

0.595
  recA Ralstonia pseudosolanacearum GMI1000

64.615

92.068

0.595
  recA Acinetobacter baumannii D1279779

63.354

91.218

0.578
  recA Glaesserella parasuis strain SC1401

58.501

98.3

0.575
  recA Streptococcus pneumoniae Rx1

57.386

99.717

0.572
  recA Streptococcus pneumoniae TIGR4

57.386

99.717

0.572
  recA Streptococcus pneumoniae R6

57.386

99.717

0.572
  recA Streptococcus pneumoniae D39

57.386

99.717

0.572
  recA Neisseria gonorrhoeae strain FA1090

62.229

91.501

0.569
  recA Neisseria gonorrhoeae MS11

62.229

91.501

0.569
  recA Neisseria gonorrhoeae MS11

62.229

91.501

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

60.121

93.768

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

62.187

90.652

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.982

94.618

0.558
  recA Streptococcus mitis SK321

60

92.068

0.552
  recA Streptococcus mitis NCTC 12261

60

92.068

0.552
  recA Helicobacter pylori strain NCTC11637

58.967

93.201

0.55
  recA Helicobacter pylori 26695

58.967

93.201

0.55
  recA Vibrio cholerae strain A1552

60.248

91.218

0.55
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.248

91.218

0.55
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.133

94.051

0.547
  recA Streptococcus mutans UA159

59.077

92.068

0.544
  recA Streptococcus pyogenes NZ131

58.41

92.635

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.75

90.652

0.533
  recA Lactococcus lactis subsp. cremoris KW2

56.481

91.785

0.518

Multiple sequence alignment