Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RIV7116_RS25695 Genome accession   NC_019678
Coordinates   6666861..6667940 (-) Length   359 a.a.
NCBI ID   WP_015121250.1    Uniprot ID   K9RJN5
Organism   Rivularia sp. PCC 7116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6661861..6672940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIV7116_RS35255 (Riv7116_5308) - 6661985..6662152 (-) 168 WP_015121247.1 metallothionein -
  RIV7116_RS25685 (Riv7116_5309) - 6662871..6664487 (+) 1617 WP_015121248.1 serine/threonine-protein kinase -
  RIV7116_RS25690 (Riv7116_5310) - 6665840..6666637 (+) 798 WP_015121249.1 FHA domain-containing protein -
  RIV7116_RS25695 (Riv7116_5311) recA 6666861..6667940 (-) 1080 WP_015121250.1 recombinase RecA Machinery gene
  RIV7116_RS25700 (Riv7116_5312) - 6668441..6669007 (-) 567 WP_015121251.1 nucleoside monophosphate kinase -
  RIV7116_RS25705 (Riv7116_5313) - 6669385..6669921 (+) 537 WP_015121252.1 P-loop NTPase family protein -
  RIV7116_RS25710 (Riv7116_5314) dcd 6670108..6670677 (+) 570 WP_044291196.1 dCTP deaminase -
  RIV7116_RS25715 (Riv7116_5315) thyX 6670753..6671475 (-) 723 WP_015121254.1 FAD-dependent thymidylate synthase -
  RIV7116_RS25720 (Riv7116_5316) - 6671686..6672267 (+) 582 WP_015121255.1 thioredoxin family protein -
  RIV7116_RS25725 (Riv7116_5317) - 6672360..6672875 (-) 516 WP_015121256.1 hypothetical protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38572.73 Da        Isoelectric Point: 4.6131

>NTDB_id=54681 RIV7116_RS25695 WP_015121250.1 6666861..6667940(-) (recA) [Rivularia sp. PCC 7116]
MAATNTENAGKQKALGMVLNQIERTFGKGTIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVVEIYGPESSGKTTVA
LHAVAEMQKEGGIAAYVDAEHALDPTYAAALGVDIENLLISQPDTGEAALEIVDQLVRSAAVDIVVIDSVAALVPRAEIE
GDMGDAHVGLQARLMSQALRKITGNIGKSGCTVMFINQLRMKIGISYGNPETTTGGNALKYYSSVRLDIRRIQTLKKGTE
EFGIRVKVKVAKNKVAPPFRIAEFDVIFGKGISTLGCIVDLAEETSVINRKGAWYSYNGDNISQGRDNAIKYLEEKPELL
EEIRQKVREKLDLGAVVSANSVGQASDDEDDDEDDDDDE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=54681 RIV7116_RS25695 WP_015121250.1 6666861..6667940(-) (recA) [Rivularia sp. PCC 7116]
ATGGCGGCGACTAACACAGAAAATGCAGGCAAGCAAAAAGCGCTCGGTATGGTGCTAAACCAGATAGAGCGGACTTTCGG
GAAAGGTACAATCATGCGTCTTGGTGATGCAACCAGGATGCGTGTAGAAACAATTTCTACTGGCGCGCTTACCCTAGATT
TAGCATTAGGCGGTGGTTTACCTAAAGGGCGGGTAGTTGAGATTTATGGGCCAGAAAGTTCTGGTAAAACAACCGTAGCA
CTGCACGCGGTAGCTGAGATGCAAAAAGAAGGTGGAATCGCAGCTTATGTAGACGCGGAACACGCTCTCGATCCGACTTA
TGCGGCTGCTTTGGGTGTTGATATTGAAAACTTGCTGATTTCTCAGCCAGATACCGGAGAAGCTGCTTTAGAAATCGTAG
ATCAACTAGTACGTTCAGCCGCTGTTGATATAGTAGTGATTGACTCCGTAGCAGCACTGGTTCCTCGTGCAGAAATTGAA
GGCGATATGGGTGATGCTCACGTTGGTCTTCAGGCGCGATTGATGAGTCAGGCATTACGCAAAATTACTGGTAATATCGG
TAAGTCTGGCTGCACGGTCATGTTTATCAACCAATTGCGGATGAAAATTGGTATAAGCTACGGTAATCCAGAAACTACTA
CGGGTGGTAATGCATTAAAATATTATTCCTCGGTGCGTTTGGATATTCGACGCATACAAACCTTGAAAAAAGGTACGGAA
GAATTTGGTATTCGCGTCAAAGTTAAAGTTGCGAAAAATAAAGTCGCACCACCTTTTAGAATCGCTGAATTTGACGTTAT
TTTCGGTAAAGGTATTTCTACTTTGGGCTGTATCGTCGATTTAGCAGAAGAAACCAGCGTTATCAATCGTAAGGGGGCTT
GGTACAGTTACAACGGCGATAATATTTCTCAAGGTAGGGACAATGCCATCAAATACTTGGAAGAAAAGCCAGAACTTCTC
GAAGAAATTAGGCAAAAGGTACGTGAAAAACTAGATTTAGGTGCTGTTGTTTCTGCTAACTCTGTAGGACAAGCAAGCGA
TGATGAAGACGATGATGAAGATGACGATGATGATGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9RJN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

62.428

96.379

0.602
  recA Ralstonia pseudosolanacearum GMI1000

65.538

90.529

0.593
  recA Acinetobacter baumannii D1279779

61.808

95.543

0.591
  recA Pseudomonas stutzeri DSM 10701

63.253

92.479

0.585
  recA Neisseria gonorrhoeae MS11

64.375

89.136

0.574
  recA Neisseria gonorrhoeae MS11

64.375

89.136

0.574
  recA Neisseria gonorrhoeae strain FA1090

64.375

89.136

0.574
  recA Streptococcus mutans UA159

57.79

98.329

0.568
  recA Glaesserella parasuis strain SC1401

58.671

96.379

0.565
  recA Streptococcus pneumoniae TIGR4

56.941

98.329

0.56
  recA Streptococcus pneumoniae Rx1

56.941

98.329

0.56
  recA Streptococcus pneumoniae D39

56.941

98.329

0.56
  recA Streptococcus pneumoniae R6

56.941

98.329

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

62.382

88.858

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

61.111

90.251

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.806

93.315

0.549
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.87

89.694

0.546
  recA Vibrio cholerae strain A1552

60.87

89.694

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.977

95.822

0.546
  recA Streptococcus mitis NCTC 12261

56.484

96.657

0.546
  recA Helicobacter pylori strain NCTC11637

60.372

89.972

0.543
  recA Helicobacter pylori 26695

60.372

89.972

0.543
  recA Streptococcus mitis SK321

58.61

92.201

0.54
  recA Streptococcus pyogenes NZ131

58.589

90.808

0.532
  recA Lactococcus lactis subsp. cremoris KW2

56.97

91.922

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.367

88.858

0.51

Multiple sequence alignment