Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J3R86_RS07655 Genome accession   NZ_CP071589
Coordinates   1703096..1704145 (-) Length   349 a.a.
NCBI ID   WP_207516820.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1698096..1709145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS07635 (J3R86_07635) - 1698632..1698847 (+) 216 WP_002463863.1 hypothetical protein -
  J3R86_RS07640 (J3R86_07640) - 1699720..1700562 (-) 843 WP_207518532.1 IS30 family transposase -
  J3R86_RS07645 (J3R86_07645) - 1700572..1700793 (-) 222 WP_207516818.1 helix-turn-helix domain-containing protein -
  J3R86_RS07650 (J3R86_07650) rny 1700982..1702541 (-) 1560 WP_207516819.1 ribonuclease Y -
  J3R86_RS07655 (J3R86_07655) recA 1703096..1704145 (-) 1050 WP_207516820.1 recombinase RecA Machinery gene
  J3R86_RS07660 (J3R86_07660) - 1704319..1705461 (-) 1143 WP_207516821.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  J3R86_RS07665 (J3R86_07665) pgsA 1706016..1706591 (-) 576 WP_207516822.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J3R86_RS07670 (J3R86_07670) - 1706625..1707017 (-) 393 WP_207516823.1 helix-turn-helix domain-containing protein -
  J3R86_RS07675 (J3R86_07675) - 1707040..1707867 (-) 828 WP_207516824.1 YmfK family protein -
  J3R86_RS07680 (J3R86_07680) - 1707960..1708664 (-) 705 WP_207516825.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37887.83 Da        Isoelectric Point: 4.9353

>NTDB_id=546737 J3R86_RS07655 WP_207516820.1 1703096..1704145(-) (recA) [Staphylococcus simiae strain 17941E]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKARRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDVVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGIFDGDVEGSEEEAPKSLFEEEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=546737 J3R86_RS07655 WP_207516820.1 1703096..1704145(-) (recA) [Staphylococcus simiae strain 17941E]
TTGGATAATGATCGTCAAAAAGCTCTAGATACAGTAATAAAAAATATGGAAAAGTCTTTTGGTAAAGGTGCAGTAATGAA
ACTTGGGGACAATAAAGCTCGTCGTGTTTCAAGTACATCAAGTGGTTCAGTGACATTGGATAATGCATTAGGTGTCGGTG
GTTACCCTAAAGGACGTATTATTGAAATATATGGTCCTGAAAGTTCTGGTAAAACTACTGTAGCACTTCATGCTATTGCC
GAAGTACAAAGTAATGGTGGTGTAGCAGCATTTATAGATGCTGAACATGCGTTAGATCCAGTGTACGCTCAAGCGCTAGG
CGTGGATATTGATAATTTATATTTGTCACAACCTGACCATGGCGAACAAGGTTTAGAAATTGCAGAAGCATTTGTACGAA
GTGGCGCTGTCGATGTTGTAGTAGTTGACTCAGTTGCAGCTCTAACGCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGACTACAAGCACGTTTGATGTCACAAGCCTTACGTAAGTTATCTGGTGCTATTTCTAAATCAAATACAAC
AGCTATTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTCATGTTCGGTAACCCTGAGACAACACCGGGTGGTAGAGCAT
TAAAATTCTATAGCTCTGTTAGACTAGAAGTACGTCGTGCTGAACAATTGAAACAAGGACAAGAAATTGTTGGTAATAGA
ACTAAAATTAAGGTTGTTAAAAATAAAGTTGCACCACCATTTAGAGTTGCAGAAGTGGATATTATGTATGGACAAGGCAT
CTCTAAAGAAGGCGAACTTATTGATTTAGGTGTTGAAAATGAAATTGTTGATAAATCCGGTGCTTGGTATTCATATAATG
GTGAAAGAATGGGCCAAGGTAAAGAAAACGTTAAAATGTACTTAAAAGAGAATCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGTGAAAAGCTTGGAATTTTTGATGGTGATGTTGAAGGTTCTGAAGAAGAAGCGCCTAAGTCACTTTTTGAAGA
GGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.41

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

70.427

93.983

0.662
  recA Streptococcus pyogenes NZ131

68.389

94.269

0.645
  recA Acinetobacter baumannii D1279779

64.08

99.713

0.639
  recA Streptococcus mutans UA159

66.168

95.702

0.633
  recA Streptococcus pneumoniae R6

66.366

95.415

0.633
  recA Streptococcus pneumoniae Rx1

66.366

95.415

0.633
  recA Streptococcus pneumoniae D39

66.366

95.415

0.633
  recA Streptococcus pneumoniae TIGR4

66.366

95.415

0.633
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.706

97.421

0.63
  recA Streptococcus mitis NCTC 12261

66.066

95.415

0.63
  recA Neisseria gonorrhoeae MS11

64.516

97.708

0.63
  recA Neisseria gonorrhoeae strain FA1090

64.516

97.708

0.63
  recA Neisseria gonorrhoeae MS11

64.516

97.708

0.63
  recA Streptococcus mitis SK321

65.766

95.415

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.559

94.842

0.622
  recA Acinetobacter baylyi ADP1

66.258

93.41

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.951

93.41

0.616
  recA Vibrio cholerae strain A1552

65.951

93.41

0.616
  recA Helicobacter pylori 26695

64.939

93.983

0.61
  recA Helicobacter pylori strain NCTC11637

64.634

93.983

0.607
  recA Ralstonia pseudosolanacearum GMI1000

65.495

89.685

0.587
  recA Pseudomonas stutzeri DSM 10701

62.883

93.41

0.587
  recA Glaesserella parasuis strain SC1401

58.286

100

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.842

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

91.404

0.559