Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NOS7107_RS23000 Genome accession   NC_019676
Coordinates   5371421..5372491 (+) Length   356 a.a.
NCBI ID   WP_015115335.1    Uniprot ID   K9QJZ3
Organism   Nostoc sp. PCC 7107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5366421..5377491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOS7107_RS22970 (Nos7107_4608) - 5367120..5367830 (+) 711 WP_015115331.1 HAD family phosphatase -
  NOS7107_RS22975 (Nos7107_4609) ruvA 5367824..5368459 (-) 636 WP_015115332.1 Holliday junction branch migration protein RuvA -
  NOS7107_RS22980 (Nos7107_4610) - 5368456..5369063 (-) 608 Protein_4584 sucrose-phosphate phosphatase -
  NOS7107_RS28790 - 5369170..5369304 (-) 135 Protein_4585 HAD family hydrolase -
  NOS7107_RS22990 (Nos7107_4611) xseB 5369537..5369770 (-) 234 WP_015115333.1 exodeoxyribonuclease VII small subunit -
  NOS7107_RS22995 (Nos7107_4612) xseA 5369757..5371016 (-) 1260 WP_015115334.1 exodeoxyribonuclease VII large subunit -
  NOS7107_RS23000 (Nos7107_4613) recA 5371421..5372491 (+) 1071 WP_015115335.1 recombinase RecA Machinery gene
  NOS7107_RS23005 (Nos7107_4614) - 5372626..5373393 (-) 768 WP_015115336.1 FHA domain-containing protein -
  NOS7107_RS23010 (Nos7107_4615) - 5373816..5375435 (-) 1620 WP_015115337.1 serine/threonine-protein kinase -
  NOS7107_RS23015 (Nos7107_4616) hemL 5375770..5377068 (-) 1299 WP_015115338.1 glutamate-1-semialdehyde 2,1-aminomutase -
  NOS7107_RS23020 (Nos7107_4617) - 5377180..5377374 (+) 195 WP_015115339.1 ChaB family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38385.72 Da        Isoelectric Point: 4.9707

>NTDB_id=54666 NOS7107_RS23000 WP_015115335.1 5371421..5372491(+) (recA) [Nostoc sp. PCC 7107]
MATNTDNSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRLGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTGESALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEG
DMGDTHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTEE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISVLGCLVDIAEETGVLTRKGAWYSYNGDNISQGRDNAIKYLEEKPEFVE
QIKQQVRQKLDMGAVVSANSVAKVSEEEEDEYEEEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=54666 NOS7107_RS23000 WP_015115335.1 5371421..5372491(+) (recA) [Nostoc sp. PCC 7107]
ATGGCTACCAACACTGACAATTCCGGCAAGCAAAAAGCCCTGACTATGGTACTAAACCAGATTGAGCGCAGCTTCGGGAA
AGGAGCTATTATGCGTTTGGGCGATGCAACCCGGATGCGGGTGGAGACAATTTCCACTGGGGCGCTCACTTTAGATTTGG
CCTTGGGTGGCGGTTTACCTAAAGGACGGGTAATTGAGATTTATGGCCCAGAAAGTTCTGGTAAAACAACAGTAGCGCTA
CATGCCCTCGCTGAAGTCCAAAGACTAGGTGGTATTGCGGCCTTTGTGGATGCGGAACACGCCCTAGACCCTACTTATGC
GGCAGCTTTGGGTGTAGATATCGAAAATTTGCTGGTTTCCCAGCCTGACACAGGAGAATCTGCTTTAGAAATTGTTGATC
AATTGGTGCGTTCGTCCGCTGTTGACATTGTAGTTATCGACTCAGTAGCAGCATTAGTTCCCCGTGCGGAAATTGAAGGG
GATATGGGTGATACTCATGTAGGTTTACAAGCCAGGTTGATGAGCCAAGCTCTCCGTAAAATTACTGGGAATATTGGTAA
ATCTGGTTGTACAGTAATTTTCATCAACCAGTTACGGCAAAAAATCGGTGTTACCTACGGTAGTCCAGAAACCACAACTG
GTGGTAATGCCTTAAAATTTTATGCTTCTGTGCGTTTGGATATTCGCCGGATTCAAACTTTGAAAAAAGGCACAGAAGAA
TTTGGCAACCGCGTTAAGGTGAAAGTTGCTAAAAACAAAGTAGCACCACCTTTTAGAATCGCGGAATTTGACATTATTTT
TGGCAAGGGAATTTCTGTTTTAGGTTGTTTGGTCGATATAGCCGAAGAAACAGGCGTTTTAACCCGCAAGGGCGCTTGGT
ATAGCTACAACGGTGATAACATTTCTCAAGGTCGAGATAACGCGATTAAATACCTAGAAGAAAAACCAGAATTTGTTGAA
CAAATTAAACAGCAGGTACGCCAAAAACTTGATATGGGGGCTGTGGTTTCTGCTAATTCTGTAGCTAAAGTCAGTGAAGA
GGAGGAAGATGAATACGAAGAGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9QJZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

64.14

96.348

0.618
  recA Acinetobacter baylyi ADP1

62.216

98.876

0.615
  recA Acinetobacter baumannii D1279779

62.5

96.629

0.604
  recA Ralstonia pseudosolanacearum GMI1000

64.615

91.292

0.59
  recA Neisseria gonorrhoeae MS11

64.688

89.888

0.581
  recA Neisseria gonorrhoeae MS11

64.688

89.888

0.581
  recA Neisseria gonorrhoeae strain FA1090

64.688

89.888

0.581
  recA Streptococcus pneumoniae TIGR4

58.028

99.719

0.579
  recA Streptococcus pneumoniae D39

58.028

99.719

0.579
  recA Streptococcus pneumoniae R6

58.028

99.719

0.579
  recA Streptococcus pneumoniae Rx1

58.028

99.719

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.048

93.258

0.579
  recA Streptococcus mutans UA159

57.835

98.596

0.57
  recA Glaesserella parasuis strain SC1401

58

98.315

0.57
  recA Helicobacter pylori strain NCTC11637

60.542

93.258

0.565
  recA Helicobacter pylori 26695

60.542

93.258

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.143

98.315

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

91.292

0.559
  recA Vibrio cholerae strain A1552

61.231

91.292

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

57.184

97.753

0.559
  recA Streptococcus pyogenes NZ131

57.061

97.472

0.556
  recA Streptococcus mitis NCTC 12261

60.494

91.011

0.551
  recA Streptococcus mitis SK321

60.494

91.011

0.551
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.507

94.101

0.551
  recA Lactococcus lactis subsp. cremoris KW2

58.824

90.73

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.425

95.787

0.531

Multiple sequence alignment