Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J2N86_RS06820 Genome accession   NZ_CP071527
Coordinates   1532525..1533571 (+) Length   348 a.a.
NCBI ID   WP_252582139.1    Uniprot ID   -
Organism   Legionella lytica strain PCM 2298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1527525..1538571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N86_RS06805 (J2N86_06825) mutS 1528949..1531486 (-) 2538 WP_252582397.1 DNA mismatch repair protein MutS -
  J2N86_RS06810 (J2N86_06830) - 1531674..1531838 (+) 165 WP_252582136.1 hypothetical protein -
  J2N86_RS06815 (J2N86_06835) - 1531957..1532454 (+) 498 WP_252582138.1 CinA family protein -
  J2N86_RS06820 (J2N86_06840) recA 1532525..1533571 (+) 1047 WP_252582139.1 recombinase RecA Machinery gene
  J2N86_RS06825 (J2N86_06845) recX 1533564..1534004 (+) 441 WP_252582142.1 recombination regulator RecX -
  J2N86_RS06830 (J2N86_06850) alaS 1534083..1536668 (+) 2586 WP_252582145.1 alanine--tRNA ligase -
  J2N86_RS06835 (J2N86_06855) mscL 1536764..1537141 (+) 378 WP_252582148.1 large-conductance mechanosensitive channel protein MscL -
  J2N86_RS06840 (J2N86_06860) - 1537388..1537585 (+) 198 WP_252582151.1 Thivi_2564 family membrane protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37913.54 Da        Isoelectric Point: 5.1954

>NTDB_id=546001 J2N86_RS06820 WP_252582139.1 1532525..1533571(+) (recA) [Legionella lytica strain PCM 2298]
MEENKQKALAAALSQIERQFGKGSVMRMGDSNVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVI
AECQKMGGTAAFVDAEHALDPSYAQKLGVNVDELLVSQPDTGEQALEITDMLVRSAAVDVIIVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGS
ETRVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLAVQLNLIEKAGAWYSYKQEKVGQGKENVRMYLKDNPHVAAELE
KQIRSELLEKKQPLLASTTEDAFEAMDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=546001 J2N86_RS06820 WP_252582139.1 1532525..1533571(+) (recA) [Legionella lytica strain PCM 2298]
ATGGAAGAGAACAAACAAAAAGCTTTAGCAGCAGCTCTCTCGCAAATTGAACGCCAATTTGGTAAGGGCTCAGTGATGCG
TATGGGAGACAGCAATGTATCTCGTGATATCGAAGCAATCTCAACCGGTTCGTTAGGTTTGGATATTGCTTTGGGAATAG
GTGGTTTACCCAAAGGTCGTATCGTTGAAATTTATGGTCCTGAATCTTCTGGTAAAACTACTCTTACTCTGCAAGTTATT
GCTGAGTGCCAAAAAATGGGCGGTACCGCTGCGTTCGTTGACGCAGAACATGCTTTAGATCCAAGCTATGCACAAAAACT
TGGAGTTAATGTCGATGAGTTATTAGTTTCTCAACCAGATACGGGTGAGCAAGCTTTAGAAATTACCGACATGCTCGTGC
GTTCTGCTGCCGTTGATGTGATTATCGTTGACTCGGTTGCTGCACTAACACCTAAAGCAGAAATTGAAGGGGAAATGGGT
GATTCTCACGTAGGTTTGCAGGCGCGTCTGATGTCTCAAGCATTACGTAAGCTGACTGCGAACATCAAACGTTCGAATAC
CCTGGTAATTTTCATTAACCAAATTCGTATGAAAATTGGGGTGATGTTTGGTAGTCCTGAAACTACTACAGGCGGTAATG
CATTGAAGTTCTATGCTTCTGTACGTTTAGATATTCGCCGTATTGGTTCGATTAAAAAAGGTGAAGAGATCTTAGGTAGT
GAGACTCGCGTTAAAGTAGTTAAGAATAAAGTAGCACCACCATTTAAGATGACTGAATTTGATATCCTTTATAATGAAGG
TATTTCTCGTGAAAGCGAAATTATTAATTTGGCTGTTCAATTGAATCTTATTGAAAAAGCGGGCGCATGGTACAGCTACA
AACAAGAGAAAGTTGGTCAAGGTAAAGAGAATGTTCGTATGTATCTGAAGGACAATCCTCATGTTGCTGCTGAGTTAGAG
AAGCAAATTCGCTCTGAATTATTAGAGAAGAAACAACCTCTGCTAGCTTCTACTACAGAAGATGCGTTTGAGGCTATGGA
TGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.354

94.253

0.739
  recA Acinetobacter baylyi ADP1

72.941

97.701

0.713
  recA Acinetobacter baumannii D1279779

74.39

94.253

0.701
  recA Vibrio cholerae strain A1552

70.468

98.276

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.468

98.276

0.693
  recA Glaesserella parasuis strain SC1401

69.855

99.138

0.693
  recA Neisseria gonorrhoeae MS11

72

93.391

0.672
  recA Neisseria gonorrhoeae MS11

72

93.391

0.672
  recA Neisseria gonorrhoeae strain FA1090

72

93.391

0.672
  recA Ralstonia pseudosolanacearum GMI1000

72.756

89.655

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.165

95.69

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.939

94.253

0.612
  recA Helicobacter pylori strain NCTC11637

63.11

94.253

0.595
  recA Helicobacter pylori 26695

63.11

94.253

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

92.241

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

59.42

99.138

0.589
  recA Streptococcus mitis SK321

61.468

93.966

0.578
  recA Streptococcus pneumoniae R6

61.162

93.966

0.575
  recA Streptococcus pneumoniae Rx1

61.162

93.966

0.575
  recA Streptococcus pneumoniae D39

61.162

93.966

0.575
  recA Streptococcus pneumoniae TIGR4

61.162

93.966

0.575
  recA Streptococcus mitis NCTC 12261

60.856

93.966

0.572
  recA Streptococcus mutans UA159

60.429

93.678

0.566
  recA Streptococcus pyogenes NZ131

60.123

93.678

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.327

93.966

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.077

93.391

0.552