Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I8J32_RS11070 Genome accession   NZ_CP071518
Coordinates   2496734..2497771 (+) Length   345 a.a.
NCBI ID   WP_200612081.1    Uniprot ID   A0A974XX52
Organism   Agrilutibacter solisilvae strain R19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2491734..2502771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8J32_RS11055 (I8J32_011055) - 2492634..2495297 (+) 2664 WP_245156310.1 TonB-dependent receptor -
  I8J32_RS11060 (I8J32_011060) - 2495375..2495875 (+) 501 WP_200612077.1 CinA family protein -
  I8J32_RS11065 (I8J32_011065) lexA 2495918..2496544 (+) 627 WP_200612079.1 transcriptional repressor LexA -
  I8J32_RS11070 (I8J32_011070) recA 2496734..2497771 (+) 1038 WP_200612081.1 recombinase RecA Machinery gene
  I8J32_RS11075 (I8J32_011075) - 2497873..2498364 (+) 492 WP_200613106.1 regulatory protein RecX -
  I8J32_RS11080 (I8J32_011080) alaS 2498508..2501171 (+) 2664 WP_200612082.1 alanine--tRNA ligase -
  I8J32_RS11085 (I8J32_011085) csrA 2501322..2501525 (+) 204 WP_200612083.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37208.75 Da        Isoelectric Point: 5.1751

>NTDB_id=545914 I8J32_RS11070 WP_200612081.1 2496734..2497771(+) (recA) [Agrilutibacter solisilvae strain R19]
MDENKKRALSAALGQIEKQYGKGAVMRMGDQVAEPVEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQTIA
QCQKLGGTCAFVDAEHALDPTYASKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAVDMVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCMVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASIRLDIRRIGAVKKGDEIVG
NQTRIKVVKNKMAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKSGAWYGYSGERIGQGKENARQYLKDNPQLAAQL
EASLREKFTPAEARRDEGDAPVADD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=545914 I8J32_RS11070 WP_200612081.1 2496734..2497771(+) (recA) [Agrilutibacter solisilvae strain R19]
ATGGATGAGAACAAGAAGCGCGCCCTCTCGGCCGCCCTGGGCCAGATCGAAAAGCAGTACGGCAAGGGAGCGGTCATGCG
CATGGGCGACCAGGTGGCCGAACCGGTCGAGGTCATCGGCACCGGCTCGCTGATGCTGGACATCGCGCTGGGCATCGGTG
GCCTGCCCAAGGGCCGCGTCGTGGAAATCTACGGTCCCGAGTCCTCGGGCAAGACCACGCTTACCCTGCAGACCATCGCC
CAGTGCCAGAAGCTCGGAGGCACCTGCGCCTTCGTGGACGCCGAACACGCCCTCGATCCGACCTACGCCTCCAAGCTGGG
CGTGAACGTGGACGACCTGCTGGTGAGCCAGCCCGACACCGGCGAACAGGCGCTGGAAATCGCGGACATGCTGGTCCGTT
CCAACGCGGTGGACATGGTGGTCATCGACTCGGTAGCTGCACTGACGCCCAGGGCGGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCCGGTCTGCAGGCTCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACCGGCAACATCAAGCGCAGCAACTGCAT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCCGGGCAAAGCCCGGAAACCACCACGGGCGGCA
ACGCGCTGAAGTTCTACGCCTCCATTCGCCTCGACATCCGCCGCATCGGCGCAGTGAAGAAGGGCGACGAGATCGTGGGC
AACCAGACCCGCATCAAGGTCGTGAAGAACAAGATGGCCCCGCCTTTCAAGCAGGTCATCACGGAAATCCTGTACGGCGA
GGGCATCTCGCGCGAAGGCGAGCTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCGGGTGCCTGGTATGGCT
ACAGCGGGGAACGCATCGGGCAGGGCAAGGAGAATGCCCGTCAGTACCTCAAGGACAACCCGCAGCTGGCCGCCCAGCTG
GAGGCGTCGCTGCGCGAGAAGTTCACCCCCGCCGAAGCCCGTCGCGACGAGGGCGATGCTCCCGTCGCCGATGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.754

100

0.728
  recA Ralstonia pseudosolanacearum GMI1000

75.079

91.884

0.69
  recA Acinetobacter baumannii D1279779

72.256

95.072

0.687
  recA Acinetobacter baylyi ADP1

72.256

95.072

0.687
  recA Vibrio cholerae strain A1552

72.699

94.493

0.687
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.699

94.493

0.687
  recA Neisseria gonorrhoeae MS11

68.098

94.493

0.643
  recA Neisseria gonorrhoeae MS11

68.098

94.493

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.098

94.493

0.643
  recA Glaesserella parasuis strain SC1401

67.183

93.623

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.261

96.522

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.462

94.203

0.588
  recA Helicobacter pylori strain NCTC11637

60.542

96.232

0.583
  recA Helicobacter pylori 26695

60.241

96.232

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

57.434

99.42

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

60

94.203

0.565
  recA Streptococcus mitis SK321

56.851

99.42

0.565
  recA Streptococcus mitis NCTC 12261

56.56

99.42

0.562
  recA Streptococcus pyogenes NZ131

58.485

95.652

0.559
  recA Streptococcus mutans UA159

57.879

95.652

0.554
  recA Streptococcus pneumoniae D39

57.927

95.072

0.551
  recA Streptococcus pneumoniae Rx1

57.927

95.072

0.551
  recA Streptococcus pneumoniae R6

57.927

95.072

0.551
  recA Streptococcus pneumoniae TIGR4

57.927

95.072

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.97

95.652

0.545
  recA Lactococcus lactis subsp. cremoris KW2

56.923

94.203

0.536