Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JYB84_RS12600 Genome accession   NZ_CP071501
Coordinates   2880149..2881237 (-) Length   362 a.a.
NCBI ID   WP_207320405.1    Uniprot ID   A0A974XIN1
Organism   Shewanella cyperi strain FJAT-53720     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2875149..2886237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB84_RS12585 (JYB84_12585) - 2875430..2876641 (-) 1212 WP_207320403.1 aspartate kinase -
  JYB84_RS12590 (JYB84_12590) alaS 2876690..2879311 (-) 2622 WP_207320404.1 alanine--tRNA ligase -
  JYB84_RS12595 (JYB84_12595) - 2879706..2880137 (-) 432 WP_407696000.1 regulatory protein RecX -
  JYB84_RS12600 (JYB84_12600) recA 2880149..2881237 (-) 1089 WP_207320405.1 recombinase RecA Machinery gene
  JYB84_RS12605 (JYB84_12605) mutS 2881528..2884110 (+) 2583 WP_207320406.1 DNA mismatch repair protein MutS -
  JYB84_RS12610 (JYB84_12610) rpoS 2884226..2885209 (-) 984 WP_228289612.1 RNA polymerase sigma factor RpoS -
  JYB84_RS12615 (JYB84_12615) - 2885292..2886176 (-) 885 WP_207320407.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38505.99 Da        Isoelectric Point: 5.1664

>NTDB_id=545699 JYB84_RS12600 WP_207320405.1 2880149..2881237(-) (recA) [Shewanella cyperi strain FJAT-53720]
MKIDPNKEKALAAVLGQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKIAAPFKQADFQILYGQGINRTGELVDLGVLHKLIEKSGAWYSYKGDKIGQGRANAGKFLIDNPQIAAEI
DKALREMLLHRADGSSAASSSVGSGSSDSSGENVDFETGEVF

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=545699 JYB84_RS12600 WP_207320405.1 2880149..2881237(-) (recA) [Shewanella cyperi strain FJAT-53720]
ATGAAGATAGATCCAAACAAAGAGAAAGCGTTAGCCGCAGTTCTGGGCCAAATTGAGAAGCAGTTTGGCAAGGGCTCCAT
CATGAAGCTGGGTGAAGACCGCTCCATGGATGTGGAAACCATCTCCACAGGTTCGCTGTCTCTGGACGTGGCTCTGGGGG
CCGGTGGTCTGCCAATGGGCCGTATCGTTGAGATCTATGGTCCTGAATCTTCAGGTAAAACAACTCTGACACTGGAAGTG
ATTGCTGCTGCCCAGCGTGAAGGCAAGGTGTGCGCCTTTATCGACGCCGAACACGCATTGGACCCCATCTATGCCAAGAA
GCTGGGCGTGGATATCGACAATCTGCTCTGCTCTCAGCCGGATACGGGTGAACAGGCGCTGGAAATCTGTGATGCCCTGA
CCCGCAGTGGCGCCGTGGATGTGATCATCGTTGACTCGGTTGCGGCCCTGACTCCCAAGGCCGAAATCGAAGGCGAAATC
GGTGATTCCCACATGGGTCTGGCAGCGCGTATGATGAGCCAAGCCATGCGTAAGCTGGCGGGTAACCTCAAGCAATCCAA
CACCTTGCTTATCTTCATCAACCAAATTCGTATGAAGATTGGCGTGATGTTCGGCAACCCTGAAACCACCACAGGTGGTA
ACGCGCTCAAGTTCTACGCCTCAGTGCGTCTGGATATCCGCCGCACCGGCGCCATCAAGGAAGGCGACGAGGTGGTGGGT
AACGAAACCCGCGTTAAGGTGGTTAAGAACAAGATTGCTGCACCGTTCAAGCAAGCCGACTTCCAAATCCTTTACGGTCA
GGGTATCAACCGCACCGGTGAATTGGTGGATTTGGGCGTGCTGCACAAGCTGATTGAAAAGTCCGGTGCCTGGTACAGCT
ACAAGGGCGACAAGATTGGCCAGGGCCGCGCCAATGCCGGTAAGTTCCTGATTGACAATCCACAAATAGCCGCCGAAATC
GACAAGGCACTGCGCGAGATGTTGCTGCATCGTGCCGATGGCAGCAGTGCAGCCAGCAGCAGTGTTGGCTCAGGCAGCAG
TGACAGCAGTGGCGAAAACGTCGACTTTGAAACCGGGGAAGTGTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.226

97.79

0.785
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.226

97.79

0.785
  recA Pseudomonas stutzeri DSM 10701

74.618

90.331

0.674
  recA Acinetobacter baylyi ADP1

70.238

92.818

0.652
  recA Glaesserella parasuis strain SC1401

67.241

96.133

0.646
  recA Acinetobacter baumannii D1279779

71.254

90.331

0.644
  recA Neisseria gonorrhoeae MS11

67.365

92.265

0.622
  recA Neisseria gonorrhoeae MS11

67.365

92.265

0.622
  recA Neisseria gonorrhoeae strain FA1090

67.365

92.265

0.622
  recA Ralstonia pseudosolanacearum GMI1000

71.061

85.912

0.61
  recA Streptococcus mitis SK321

58.791

100

0.591
  recA Streptococcus mitis NCTC 12261

58.516

100

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.544

96.961

0.577
  recA Streptococcus mutans UA159

57.341

99.724

0.572
  recA Streptococcus pneumoniae TIGR4

62.195

90.608

0.564
  recA Streptococcus pneumoniae Rx1

62.195

90.608

0.564
  recA Streptococcus pneumoniae D39

62.195

90.608

0.564
  recA Streptococcus pneumoniae R6

62.195

90.608

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

91.989

0.558
  recA Streptococcus pyogenes NZ131

60.976

90.608

0.552
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

88.674

0.55
  recA Helicobacter pylori strain NCTC11637

60.245

90.331

0.544
  recA Helicobacter pylori 26695

59.939

90.331

0.541
  recA Lactococcus lactis subsp. cremoris KW2

59.451

90.608

0.539
  recA Latilactobacillus sakei subsp. sakei 23K

60.815

88.122

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.048

87.017

0.514