Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J0B03_RS00520 Genome accession   NZ_CP071444
Coordinates   106650..107669 (+) Length   339 a.a.
NCBI ID   WP_207299953.1    Uniprot ID   -
Organism   Alkalibacter rhizosphaerae strain ES005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101650..112669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0B03_RS00505 (J0B03_00505) rimO 103453..104793 (+) 1341 WP_207299950.1 30S ribosomal protein S12 methylthiotransferase RimO -
  J0B03_RS00510 (J0B03_00510) pgsA 104777..105319 (+) 543 WP_207299951.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J0B03_RS00515 (J0B03_00515) - 105329..106564 (+) 1236 WP_207299952.1 competence/damage-inducible protein A -
  J0B03_RS00520 (J0B03_00520) recA 106650..107669 (+) 1020 WP_207299953.1 recombinase RecA Machinery gene
  J0B03_RS00525 (J0B03_00525) rny 107878..109425 (+) 1548 WP_207300946.1 ribonuclease Y -
  J0B03_RS00530 (J0B03_00530) - 109514..110293 (+) 780 WP_207299954.1 TIGR00282 family metallophosphoesterase -
  J0B03_RS00535 (J0B03_00535) - 110366..111205 (+) 840 WP_207299955.1 PHP domain-containing protein -
  J0B03_RS00540 (J0B03_00540) - 111233..112432 (+) 1200 WP_207299956.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36790.92 Da        Isoelectric Point: 6.1738

>NTDB_id=545342 J0B03_RS00520 WP_207299953.1 106650..107669(+) (recA) [Alkalibacter rhizosphaerae strain ES005]
MIEKDKALQMALAQIEKQFGKGSIMKLGEESGRQNIPAISTTSIGLDIALGIGGIPRGRVVEVYGPESSGKTTVALHVIA
EAQRNGGNAAFIDAEHALDPNYAKALGVDIENLIVSQPDTGEQALEICEALVRSGAVDIVVIDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLTGSINKSGTTALFINQLREKVGVMFGSPETTPGGRALKFYSSVRLDVRRIETLKQGQEMIGNR
TRVKVVKNKVAPPFKTAEFDIMYGQGISREGDILDVGSSVDIINKSGAWYSYNDEKIGQGRENAKQFLKENPETCKEIEK
KIRSHFNLDRKPQEETPAE

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=545342 J0B03_RS00520 WP_207299953.1 106650..107669(+) (recA) [Alkalibacter rhizosphaerae strain ES005]
ATGATAGAAAAAGATAAGGCATTACAAATGGCACTGGCACAAATAGAAAAGCAATTTGGCAAAGGTTCCATCATGAAACT
TGGCGAAGAGTCCGGCAGACAAAACATACCTGCCATCTCAACCACCTCCATAGGTTTGGATATCGCACTGGGTATTGGCG
GAATCCCAAGAGGCCGTGTCGTGGAAGTGTATGGACCGGAATCTTCCGGTAAGACCACTGTGGCTTTGCATGTTATTGCG
GAAGCACAAAGAAATGGCGGCAATGCGGCGTTTATCGATGCGGAACACGCGTTGGATCCCAATTATGCAAAAGCCCTGGG
CGTCGACATTGAAAACCTCATCGTATCCCAGCCGGATACGGGAGAACAGGCTTTGGAGATCTGTGAAGCATTGGTCCGTA
GTGGAGCCGTGGATATCGTTGTCATCGACTCTGTTGCAGCATTAGTGCCAAGAGCAGAGATCGAAGGAGAAATGGGTGAC
TCCCACGTCGGTCTGCAGGCAAGACTTATGAGTCAGGCACTTCGGAAATTGACAGGTTCCATCAACAAGTCTGGAACGAC
AGCATTGTTTATCAATCAACTCCGAGAAAAAGTCGGTGTCATGTTCGGAAGTCCTGAAACCACACCTGGAGGACGGGCAT
TAAAATTCTATTCCTCCGTCCGTTTGGACGTTCGACGGATCGAAACGTTGAAGCAGGGTCAGGAAATGATCGGTAACCGG
ACCAGAGTGAAAGTTGTAAAAAATAAAGTAGCTCCTCCGTTTAAAACTGCAGAGTTTGATATCATGTATGGCCAGGGGAT
CTCCAGGGAAGGGGATATTCTCGACGTAGGAAGCAGTGTGGACATCATCAACAAATCCGGCGCATGGTATTCCTACAATG
ATGAAAAAATCGGTCAAGGTAGAGAGAATGCCAAGCAATTTTTGAAAGAAAATCCGGAGACTTGCAAAGAAATCGAAAAG
AAGATCCGAAGCCACTTCAATTTGGATCGAAAACCCCAAGAGGAAACCCCAGCAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

73.556

97.05

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

67.761

98.82

0.67
  recA Neisseria gonorrhoeae MS11

65.689

100

0.661
  recA Neisseria gonorrhoeae MS11

65.689

100

0.661
  recA Neisseria gonorrhoeae strain FA1090

65.689

100

0.661
  recA Streptococcus pneumoniae R6

66.667

97.345

0.649
  recA Streptococcus pneumoniae Rx1

66.667

97.345

0.649
  recA Streptococcus pneumoniae D39

66.667

97.345

0.649
  recA Streptococcus pneumoniae TIGR4

66.667

97.345

0.649
  recA Streptococcus mitis NCTC 12261

66.061

97.345

0.643
  recA Streptococcus mitis SK321

66.061

97.345

0.643
  recA Lactococcus lactis subsp. cremoris KW2

65.758

97.345

0.64
  recA Streptococcus mutans UA159

65.455

97.345

0.637
  recA Pseudomonas stutzeri DSM 10701

64.371

98.525

0.634
  recA Helicobacter pylori strain NCTC11637

63.235

100

0.634
  recA Streptococcus pyogenes NZ131

65.244

96.755

0.631
  recA Helicobacter pylori 26695

62.941

100

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

96.46

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.938

94.395

0.622
  recA Vibrio cholerae strain A1552

65.938

94.395

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.724

96.165

0.622
  recA Ralstonia pseudosolanacearum GMI1000

66.879

92.625

0.619
  recA Acinetobacter baylyi ADP1

62.5

99.115

0.619
  recA Glaesserella parasuis strain SC1401

63.889

95.575

0.611
  recA Acinetobacter baumannii D1279779

63.158

95.28

0.602
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

94.69

0.581