Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ANA_RS14155 Genome accession   NC_019427
Coordinates   3251333..3252406 (-) Length   357 a.a.
NCBI ID   WP_015080742.1    Uniprot ID   -
Organism   Anabaena sp. 90     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3246333..3257406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANA_RS14140 (ANA_C12881) - 3246989..3249175 (-) 2187 WP_015080739.1 HAD-IIB family hydrolase -
  ANA_RS14145 (ANA_C12883) queG 3249618..3250592 (+) 975 WP_015080740.1 tRNA epoxyqueuosine(34) reductase QueG -
  ANA_RS14150 (ANA_C12884) - 3250567..3251202 (+) 636 WP_041458072.1 HAD-IA family hydrolase -
  ANA_RS14155 (ANA_C12885) recA 3251333..3252406 (-) 1074 WP_015080742.1 recombinase RecA Machinery gene
  ANA_RS14160 (ANA_C12887) dpdE 3252921..3256238 (-) 3318 WP_015080743.1 protein DpdE -
  ANA_RS14165 (ANA_C12888) - 3256445..3256894 (+) 450 WP_015080744.1 thioesterase family protein -

Sequence


Protein


Download         Length: 357 a.a.        Molecular weight: 38200.63 Da        Isoelectric Point: 5.0690

>NTDB_id=54440 ANA_RS14155 WP_015080742.1 3251333..3252406(-) (recA) [Anabaena sp. 90]
MAANTETSGKQKALNIVLGQIERSFGKGAIMRLGDATRMKVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLVSQPDNGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDIHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGVSTIGCLVDIAEETGVLLRKGAWYSYSGENISQGRDNAIKYLEEKPEFAA
KVKEQVLEKLDKGAVVSANSVVQPHDVEEEEEIELEE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=54440 ANA_RS14155 WP_015080742.1 3251333..3252406(-) (recA) [Anabaena sp. 90]
ATGGCAGCTAATACCGAGACTTCTGGCAAGCAAAAAGCGTTAAATATCGTCCTGGGACAAATTGAGCGCAGCTTCGGGAA
AGGAGCAATTATGCGCCTGGGTGATGCCACCCGCATGAAGGTAGAAACAATATCCACCGGGGCGCTCACCCTAGATTTAG
CTTTAGGTGGTGGTTTACCTAAAGGACGGGTAATCGAAATCTACGGACCAGAAAGTTCTGGGAAAACTACCGTCGCCCTT
CATGCCCTCGCAGAAGTGCAGCGAAATGGCGGTATTGCCGCATTTGTAGATGCTGAACACGCCCTAGATCCTACCTATGC
CGCTGCGTTGGGTGTAGATATTGACAACTTACTTGTTTCCCAACCAGACAATGGCGAATCAGCATTAGAAATAGTTGACC
AACTTGTGCGTTCTGCGGCTGTTGATATTGTTGTTATTGACTCCGTTGCCGCTTTAGTTCCCCGCGCTGAAATTGAAGGG
GATATGGGGGATATTCACGTAGGTTTACAAGCTCGGTTAATGAGTCAAGCCCTACGGAAAATTACTGGTAATATTGGTAA
ATCTGGATGCACAGTTATTTTTATTAACCAGTTGCGGCAAAAAATCGGTGTCACCTATGGTAGTCCAGAAACTACAACGG
GTGGTAATGCGCTGAAATTTTACGCTTCCGTGCGCTTGGATATTCGCAGAATTCAAACTTTGAAAAAAGGAACTGATGAA
TTTGGCAACCGGGTCAAAGTCAAAGTAGCGAAAAATAAAGTGGCACCACCTTTTAGAATTGCCGAATTTGACATTATCTT
TGGCAAAGGAGTTTCTACCATTGGTTGTTTAGTGGATATAGCCGAAGAAACTGGTGTTCTTCTTCGTAAAGGTGCTTGGT
ATAGCTACAGTGGTGAAAATATTTCCCAAGGTCGAGATAACGCGATTAAATATTTAGAAGAAAAACCCGAATTTGCGGCC
AAAGTTAAGGAACAAGTTCTGGAAAAACTCGATAAGGGGGCTGTAGTTTCCGCTAATTCTGTAGTTCAACCTCATGACGT
TGAAGAGGAAGAAGAGATTGAATTAGAGGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

62.931

97.479

0.613

  recA Acinetobacter baumannii D1279779

62.931

97.479

0.613

  recA Pseudomonas stutzeri DSM 10701

63.393

94.118

0.597

  recA Ralstonia pseudosolanacearum GMI1000

62.538

92.717

0.58

  recA Streptococcus mitis NCTC 12261

56.284

100

0.577

  recA Streptococcus pneumoniae R6

58.028

99.44

0.577

  recA Streptococcus pneumoniae D39

58.028

99.44

0.577

  recA Streptococcus pneumoniae Rx1

58.028

99.44

0.577

  recA Streptococcus pneumoniae TIGR4

58.028

99.44

0.577

  recA Helicobacter pylori 26695

58.79

97.199

0.571

  recA Helicobacter pylori strain NCTC11637

58.79

97.199

0.571

  recA Bacillus subtilis subsp. subtilis str. 168

61.145

92.997

0.569

  recA Glaesserella parasuis strain SC1401

57.507

98.88

0.569

  recA Streptococcus mitis SK321

57.022

99.72

0.569

  recA Neisseria gonorrhoeae strain FA1090

63.009

89.356

0.563

  recA Neisseria gonorrhoeae MS11

63.009

89.356

0.563

  recA Neisseria gonorrhoeae MS11

63.009

89.356

0.563

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

90.196

0.555

  recA Vibrio cholerae strain A1552

61.491

90.196

0.555

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.407

94.958

0.555

  recA Streptococcus mutans UA159

60.681

90.476

0.549

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.815

89.356

0.543

  recA Latilactobacillus sakei subsp. sakei 23K

61.006

89.076

0.543

  recA Streptococcus pyogenes NZ131

59.202

91.317

0.541

  recA Lactococcus lactis subsp. cremoris KW2

58.696

90.196

0.529

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.418

93.838

0.529


Multiple sequence alignment