Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J0J70_RS01070 Genome accession   NZ_CP071250
Coordinates   208826..209848 (-) Length   340 a.a.
NCBI ID   WP_055243094.1    Uniprot ID   A0A9Q9CRW8
Organism   Turicibacter bilis strain ISU324     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 203826..214848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J70_RS01050 (J0J70_01055) miaB 203961..205469 (-) 1509 WP_055241271.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  J0J70_RS01055 (J0J70_01060) - 205662..205925 (-) 264 WP_006785428.1 stage V sporulation protein S -
  J0J70_RS01060 (J0J70_01065) - 205994..206785 (-) 792 WP_212724379.1 TIGR00282 family metallophosphoesterase -
  J0J70_RS01065 (J0J70_01070) rny 206911..208464 (-) 1554 WP_055243092.1 ribonuclease Y -
  J0J70_RS01070 (J0J70_01075) recA 208826..209848 (-) 1023 WP_055243094.1 recombinase RecA Machinery gene
  J0J70_RS01075 (J0J70_01080) pgsA 209990..210571 (-) 582 WP_055243096.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J0J70_RS01080 (J0J70_01085) - 210582..211430 (-) 849 WP_068759486.1 RodZ domain-containing protein -
  J0J70_RS01090 (J0J70_01095) recU 212234..212812 (+) 579 WP_068759485.1 Holliday junction resolvase RecU -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36534.78 Da        Isoelectric Point: 4.8117

>NTDB_id=544305 J0J70_RS01070 WP_055243094.1 208826..209848(-) (recA) [Turicibacter bilis strain ISU324]
MSNNREAALMQALKSIEKQYGKGSVMKLGEKTDTRIEVVSSGSLALDSALGVGGYPRGRVVEIYGPESSGKTTFALHAIA
EVQKAGGTAAFIDAEHALDPAYAAKLGVDTDELLVSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLSGAINTTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSTIRLEVRRGETIKLGTEIVGNV
AKIKVVKNKVAPPFKAVEVDVMYGEGVSKQGEILDLAVDYNIIEKSGSWYSYNGEKMGQGRENAKLFLKENPFIMEEIAD
LIRAELSIPTSNAEDMMSEE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=544305 J0J70_RS01070 WP_055243094.1 208826..209848(-) (recA) [Turicibacter bilis strain ISU324]
ATGAGTAATAATCGTGAAGCAGCTTTAATGCAAGCTTTAAAAAGCATTGAAAAGCAATACGGTAAAGGCTCAGTTATGAA
ACTGGGTGAAAAAACAGATACGCGTATTGAAGTTGTATCATCAGGATCATTAGCATTAGATTCTGCTTTAGGTGTCGGTG
GATATCCACGTGGACGTGTTGTAGAAATTTATGGACCAGAAAGTTCAGGTAAAACAACGTTTGCTTTACATGCGATTGCA
GAAGTTCAAAAAGCTGGTGGAACAGCAGCGTTCATCGATGCAGAACATGCATTAGACCCGGCATATGCAGCTAAATTAGG
TGTGGACACAGATGAATTATTAGTTTCACAACCTGATACAGGTGAACAAGCATTAGAAATTGCTGAAGCATTAGTTCGAA
GTGGTGCAATCGATATTTTAGTTGTCGATTCAGTTGCAGCCCTTGTGCCACGTGCGGAAATCGAAGGTGAAATGGGAGAC
TCACACGTTGGGTTACAAGCTCGTTTAATGTCACAAGCCTTACGTAAGTTATCAGGGGCCATCAATACAACCAAAACGAT
TGCTATTTTCATTAACCAAATTCGTGAAAAAGTTGGAGTTATGTTTGGGAATCCTGAAGTAACACCTGGTGGACGTGCCT
TAAAATTCTATTCAACAATTCGTTTAGAAGTACGCCGTGGTGAAACTATTAAATTAGGAACTGAGATTGTTGGAAACGTG
GCAAAAATAAAAGTGGTAAAAAATAAAGTGGCTCCACCTTTTAAAGCGGTTGAAGTGGACGTTATGTATGGTGAAGGAGT
CTCTAAACAAGGTGAGATTTTAGACCTTGCAGTGGATTACAATATCATTGAGAAAAGTGGATCTTGGTATTCGTACAATG
GTGAGAAAATGGGACAAGGACGTGAAAATGCGAAATTGTTCTTAAAAGAAAATCCATTTATTATGGAAGAGATTGCTGAT
TTAATCCGTGCGGAATTAAGTATTCCAACATCTAATGCTGAAGACATGATGTCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.882

94.412

0.735
  recA Latilactobacillus sakei subsp. sakei 23K

72.781

99.412

0.724
  recA Streptococcus mutans UA159

65.598

100

0.662
  recA Streptococcus mitis NCTC 12261

67.781

96.765

0.656
  recA Streptococcus pneumoniae Rx1

67.781

96.765

0.656
  recA Streptococcus pneumoniae D39

67.781

96.765

0.656
  recA Streptococcus pneumoniae R6

67.781

96.765

0.656
  recA Streptococcus pneumoniae TIGR4

67.781

96.765

0.656
  recA Streptococcus mitis SK321

67.477

96.765

0.653
  recA Streptococcus pyogenes NZ131

66.163

97.353

0.644
  recA Acinetobacter baylyi ADP1

62.391

100

0.629
  recA Ralstonia pseudosolanacearum GMI1000

61.494

100

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.741

95.294

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

97.353

0.615
  recA Glaesserella parasuis strain SC1401

63.415

96.471

0.612
  recA Neisseria gonorrhoeae strain FA1090

64

95.588

0.612
  recA Neisseria gonorrhoeae MS11

64

95.588

0.612
  recA Neisseria gonorrhoeae MS11

64

95.588

0.612
  recA Acinetobacter baumannii D1279779

61.176

100

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

98.824

0.606
  recA Vibrio cholerae strain A1552

61.31

98.824

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.767

100

0.603
  recA Pseudomonas stutzeri DSM 10701

60.479

98.235

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.963

95.882

0.594
  recA Helicobacter pylori strain NCTC11637

58.16

99.118

0.576
  recA Helicobacter pylori 26695

58.16

99.118

0.576