Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J0J69_RS12815 Genome accession   NZ_CP071249
Coordinates   2667574..2668596 (+) Length   340 a.a.
NCBI ID   WP_055305937.1    Uniprot ID   -
Organism   Turicibacter bilis strain MMM721     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2662574..2673596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J69_RS12795 (J0J69_12850) recU 2664610..2665188 (-) 579 WP_068759485.1 Holliday junction resolvase RecU -
  J0J69_RS12805 (J0J69_12860) - 2665992..2666840 (+) 849 WP_068759486.1 RodZ domain-containing protein -
  J0J69_RS12810 (J0J69_12865) pgsA 2666851..2667432 (+) 582 WP_055243096.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J0J69_RS12815 (J0J69_12870) recA 2667574..2668596 (+) 1023 WP_055305937.1 recombinase RecA Machinery gene
  J0J69_RS12820 (J0J69_12875) rny 2668957..2670510 (+) 1554 WP_055243092.1 ribonuclease Y -
  J0J69_RS12825 (J0J69_12880) - 2670636..2671427 (+) 792 WP_055243090.1 TIGR00282 family metallophosphoesterase -
  J0J69_RS12830 (J0J69_12885) - 2671496..2671759 (+) 264 WP_006785428.1 stage V sporulation protein S -
  J0J69_RS12835 (J0J69_12890) miaB 2671952..2673460 (+) 1509 WP_055241271.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36520.75 Da        Isoelectric Point: 4.8078

>NTDB_id=544300 J0J69_RS12815 WP_055305937.1 2667574..2668596(+) (recA) [Turicibacter bilis strain MMM721]
MSNNREAALMQALKSIEKQYGKGSVMKLGEKTDTRIEVVSSGSLALDSALGVGGYPRGRVVEIYGPESSGKTTFALHAIA
EVQKAGGTAAFIDAEHALDPAYAAKLGVDTDELLVSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLSGAINTTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSTIRLEVRRGETIKLGTDIVGNV
AKIKVVKNKVAPPFKAVEVDVMYGEGVSKQGEILDLAVDYNIIEKSGSWYSYNGEKMGQGRENAKLFLKENPFIMEEIAD
LIRAELSIPTSNAEDMMSEE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=544300 J0J69_RS12815 WP_055305937.1 2667574..2668596(+) (recA) [Turicibacter bilis strain MMM721]
ATGAGTAATAATCGTGAAGCAGCTTTAATGCAAGCTTTAAAAAGCATTGAAAAGCAATACGGTAAAGGCTCAGTTATGAA
ACTGGGTGAAAAAACAGATACGCGTATTGAAGTTGTATCATCAGGATCATTAGCATTAGATTCTGCTTTAGGTGTCGGTG
GATATCCACGTGGACGTGTTGTAGAAATTTATGGACCAGAAAGTTCAGGTAAAACAACGTTTGCTTTACATGCGATTGCA
GAAGTTCAAAAAGCTGGTGGAACAGCAGCGTTCATCGATGCAGAACATGCATTAGACCCGGCATATGCAGCTAAATTAGG
TGTGGACACAGATGAATTATTAGTTTCACAACCTGATACAGGTGAACAAGCATTAGAAATTGCTGAAGCATTAGTTCGAA
GTGGTGCAATCGATATTTTAGTTGTCGATTCAGTTGCAGCCCTTGTGCCACGTGCGGAAATCGAAGGTGAAATGGGAGAC
TCACACGTTGGGTTACAAGCTCGTTTAATGTCACAAGCCTTACGTAAGTTATCAGGGGCCATCAATACAACCAAAACGAT
TGCTATTTTCATTAACCAAATTCGTGAAAAAGTTGGAGTTATGTTTGGGAATCCTGAAGTAACACCTGGTGGACGTGCCT
TAAAATTCTATTCAACAATTCGTTTAGAAGTACGCCGTGGAGAAACTATTAAATTAGGAACTGACATTGTTGGAAACGTC
GCAAAAATAAAAGTGGTAAAAAATAAAGTGGCTCCACCTTTTAAAGCGGTTGAAGTAGACGTTATGTATGGTGAAGGAGT
CTCTAAACAAGGTGAGATTTTAGACCTTGCAGTGGATTACAATATTATTGAGAAAAGTGGATCTTGGTATTCGTACAATG
GTGAGAAAATGGGACAAGGACGTGAAAATGCGAAATTGTTCTTAAAAGAAAATCCATTTATTATGGAAGAGATTGCTGAT
TTAATCCGTGCGGAATTAAGTATTCCAACATCTAATGCTGAAGACATGATGTCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

78.193

94.412

0.738
  recA Latilactobacillus sakei subsp. sakei 23K

73.077

99.412

0.726
  recA Streptococcus mutans UA159

65.698

100

0.665
  recA Streptococcus pneumoniae D39

67.683

96.471

0.653
  recA Streptococcus pneumoniae R6

67.683

96.471

0.653
  recA Streptococcus mitis NCTC 12261

67.683

96.471

0.653
  recA Streptococcus pneumoniae Rx1

67.683

96.471

0.653
  recA Streptococcus pneumoniae TIGR4

67.683

96.471

0.653
  recA Streptococcus mitis SK321

67.378

96.471

0.65
  recA Streptococcus pyogenes NZ131

66.061

97.059

0.641
  recA Lactococcus lactis subsp. cremoris KW2

65.741

95.294

0.626
  recA Ralstonia pseudosolanacearum GMI1000

61.207

100

0.626
  recA Acinetobacter baylyi ADP1

62.099

100

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

97.353

0.612
  recA Glaesserella parasuis strain SC1401

63.11

96.471

0.609
  recA Neisseria gonorrhoeae MS11

63.692

95.588

0.609
  recA Neisseria gonorrhoeae MS11

63.692

95.588

0.609
  recA Neisseria gonorrhoeae strain FA1090

63.692

95.588

0.609
  recA Acinetobacter baumannii D1279779

60.882

100

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.012

98.824

0.603
  recA Vibrio cholerae strain A1552

61.012

98.824

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.475

100

0.6
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.27

95.882

0.597
  recA Pseudomonas stutzeri DSM 10701

60.18

98.235

0.591
  recA Helicobacter pylori strain NCTC11637

58.16

99.118

0.576
  recA Helicobacter pylori 26695

58.16

99.118

0.576