Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BN424_RS09290 Genome accession   NC_019425
Coordinates   2001137..2002174 (+) Length   345 a.a.
NCBI ID   WP_016356480.1    Uniprot ID   -
Organism   Carnobacterium maltaromaticum LMA28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996137..2007174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN424_RS09250 (BN424_1968) - 1996149..1996919 (+) 771 WP_015076613.1 peptidylprolyl isomerase -
  BN424_RS09255 (BN424_1969) - 1996992..1997555 (+) 564 WP_016356477.1 nucleotidyltransferase family protein -
  BN424_RS09260 (BN424_1970) - 1997621..1997881 (-) 261 WP_010053021.1 metal-sensitive transcriptional regulator -
  BN424_RS09265 (BN424_1971) - 1997871..1998176 (-) 306 WP_015076615.1 rhodanese-like domain-containing protein -
  BN424_RS09270 (BN424_1972) - 1998179..1999828 (-) 1650 WP_015076616.1 FAD-dependent oxidoreductase -
  BN424_RS09275 (BN424_1973) - 1999831..2000136 (-) 306 WP_029451614.1 rhodanese-like domain-containing protein -
  BN424_RS09280 (BN424_1974) - 2000223..2000588 (-) 366 WP_016356479.1 ATP-binding cassette domain-containing protein -
  BN424_RS09285 (BN424_1975) - 2000578..2000802 (-) 225 WP_010053004.1 PLD nuclease N-terminal domain-containing protein -
  BN424_RS09290 (BN424_1976) recA 2001137..2002174 (+) 1038 WP_016356480.1 recombinase RecA Machinery gene
  BN424_RS09295 (BN424_1977) - 2002333..2002866 (+) 534 WP_010053002.1 Rrf2 family transcriptional regulator -
  BN424_RS09300 (BN424_1978) - 2002993..2003475 (-) 483 WP_010053000.1 hypothetical protein -
  BN424_RS09305 (BN424_1979) - 2003950..2004702 (+) 753 WP_015076620.1 DeoR/GlpR family DNA-binding transcription regulator -
  BN424_RS09310 (BN424_1980) pfkB 2004699..2005613 (+) 915 WP_010052997.1 1-phosphofructokinase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36983.37 Da        Isoelectric Point: 5.3610

>NTDB_id=54413 BN424_RS09290 WP_016356480.1 2001137..2002174(+) (recA) [Carnobacterium maltaromaticum LMA28]
MGDGKQAALSKALSKIEKDFGKGAIMKLGEKTSMKIETISSGSIALDVALGVGGYPKGRILEVYGPESSGKTTMALHAIA
EAQKAGGTAAFIDAEHALDPKYAAALGVNIDDLLLSQPDTGEQALEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGQ
SHVGLQARLMSQALRKLSGSINNTKTICIFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEVRRAEQIKTGTDILGNR
TKLKVVKNKVAPPFKIAEVDIMYGEGISRAGELVDMASDSDIIDKAGAWYSYNGERIGQGRENAKKYLLDNPELYAEIEK
KVRDNYFAKEVAVEPEKTEAPIEKE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=54413 BN424_RS09290 WP_016356480.1 2001137..2002174(+) (recA) [Carnobacterium maltaromaticum LMA28]
ATGGGCGACGGCAAACAAGCTGCATTAAGCAAAGCTCTTAGTAAAATTGAAAAAGATTTTGGTAAAGGCGCCATTATGAA
ATTAGGCGAAAAAACATCAATGAAAATTGAAACAATTTCAAGCGGCTCAATCGCTTTAGATGTGGCATTAGGAGTAGGTG
GTTATCCTAAAGGACGGATCCTTGAAGTCTATGGTCCTGAAAGTTCTGGTAAAACAACTATGGCTTTACATGCTATTGCA
GAAGCCCAAAAAGCTGGTGGAACTGCAGCCTTTATTGATGCCGAACATGCTTTAGACCCAAAATATGCAGCCGCTTTAGG
CGTTAATATTGATGATTTACTTCTATCACAGCCTGACACTGGTGAGCAAGCACTTGAAATTGCTGATGCATTAGTATCCA
GTGGTGCCGTAGATATTTTGGTTGTCGATTCAGTTGCTGCTCTTGTTCCTCGTGCCGAAATCGAAGGTGAAATGGGACAA
AGTCATGTTGGTCTTCAAGCTAGACTTATGTCACAAGCTCTTCGTAAATTATCAGGATCAATCAATAATACAAAAACTAT
TTGTATCTTTATTAACCAAATTCGTGAGAAAGTTGGCGTCATGTTTGGGAATCCTGAAGTAACTCCTGGTGGACGTGCGC
TTAAATTCTATGCAACCATTCGGTTAGAAGTTCGTCGTGCTGAACAAATTAAAACTGGTACTGACATTTTAGGAAATAGA
ACAAAACTAAAAGTTGTAAAAAATAAAGTAGCTCCACCTTTTAAAATTGCTGAGGTAGATATTATGTACGGTGAAGGTAT
CTCACGTGCTGGTGAATTAGTGGATATGGCTTCTGATAGTGATATTATCGACAAGGCTGGCGCATGGTATTCATATAATG
GAGAACGCATTGGTCAAGGCCGTGAAAATGCTAAAAAATATCTATTAGATAACCCTGAGCTATATGCTGAAATTGAGAAA
AAAGTTCGCGATAATTACTTTGCTAAAGAAGTTGCTGTTGAACCAGAAAAAACAGAAGCACCTATTGAAAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

75.802

99.42

0.754
  recA Streptococcus mitis SK321

70.145

100

0.701
  recA Streptococcus pyogenes NZ131

72.727

95.652

0.696
  recA Bacillus subtilis subsp. subtilis str. 168

74.224

93.333

0.693
  recA Streptococcus mutans UA159

72.424

95.652

0.693
  recA Streptococcus mitis NCTC 12261

71.515

95.652

0.684
  recA Streptococcus pneumoniae Rx1

71.212

95.652

0.681
  recA Streptococcus pneumoniae D39

71.212

95.652

0.681
  recA Streptococcus pneumoniae R6

71.212

95.652

0.681
  recA Streptococcus pneumoniae TIGR4

71.212

95.652

0.681
  recA Lactococcus lactis subsp. cremoris KW2

66.254

93.623

0.62
  recA Acinetobacter baylyi ADP1

61.628

99.71

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.063

96.522

0.609
  recA Ralstonia pseudosolanacearum GMI1000

62.874

96.812

0.609
  recA Acinetobacter baumannii D1279779

61.224

99.42

0.609
  recA Vibrio cholerae strain A1552

61.652

98.261

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.652

98.261

0.606
  recA Neisseria gonorrhoeae strain FA1090

63.889

93.913

0.6
  recA Neisseria gonorrhoeae MS11

63.889

93.913

0.6
  recA Neisseria gonorrhoeae MS11

63.889

93.913

0.6
  recA Glaesserella parasuis strain SC1401

63.75

92.754

0.591
  recA Pseudomonas stutzeri DSM 10701

62.539

93.623

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.35

94.493

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.755

92.464

0.571
  recA Helicobacter pylori 26695

59.021

94.783

0.559
  recA Helicobacter pylori strain NCTC11637

59.021

94.783

0.559

Multiple sequence alignment