Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   THEOS_RS00915 Genome accession   NC_019386
Coordinates   170482..171504 (+) Length   340 a.a.
NCBI ID   WP_016328462.1    Uniprot ID   K7RFC0
Organism   Thermus oshimai JL-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 165482..176504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THEOS_RS00885 (Theos_0174) phoU 165681..166343 (+) 663 WP_016328456.1 phosphate signaling complex protein PhoU -
  THEOS_RS00890 (Theos_0175) - 166340..166960 (-) 621 WP_016328457.1 HAD family hydrolase -
  THEOS_RS00895 (Theos_0176) - 166953..167996 (-) 1044 WP_016328458.1 MFS transporter -
  THEOS_RS00900 (Theos_0177) - 168035..168805 (+) 771 WP_016328459.1 folate-binding protein YgfZ -
  THEOS_RS00905 (Theos_0178) - 168784..169968 (+) 1185 WP_016328460.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  THEOS_RS00910 (Theos_0179) thpR 169965..170522 (+) 558 WP_016328461.1 RNA 2',3'-cyclic phosphodiesterase -
  THEOS_RS00915 (Theos_0180) recA 170482..171504 (+) 1023 WP_016328462.1 recombinase RecA Machinery gene
  THEOS_RS00920 (Theos_0181) rny 171505..173208 (+) 1704 WP_016328463.1 ribonuclease Y -
  THEOS_RS00925 (Theos_0182) - 173225..174256 (+) 1032 WP_016328464.1 rod shape-determining protein -
  THEOS_RS00930 (Theos_0183) fabZ 174260..174685 (+) 426 WP_016328465.1 3-hydroxyacyl-ACP dehydratase FabZ -
  THEOS_RS00935 (Theos_0184) - 174685..175341 (+) 657 WP_016328466.1 hypothetical protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36414.05 Da        Isoelectric Point: 5.6085

>NTDB_id=54346 THEOS_RS00915 WP_016328462.1 170482..171504(+) (recA) [Thermus oshimai JL-2]
MNEEKKKALENALKTIEKTFGKGAVMRLGEVPKLQVDVIPTGSLGLDLALGIGGIPRGRIIEIYGPESGGKTTLALTIIA
QAQKQGGVAAFVDAEHALDPLYAAKLGVNLEDLLVSQPDTGEQALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGD
QHVGLQARLMSQALRKLTAVLSKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYSSVRLDVRKSGQPIKVGNEAVGI
RVKVKVVKNKLAPPFRETELEIYFGRGLDPVMDLVNVAVAAGVIEKAGSWFSYGESRLGQGKEKAADYLRERPELLEEIR
AKVLERANEVVLVASEDEGA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=54346 THEOS_RS00915 WP_016328462.1 170482..171504(+) (recA) [Thermus oshimai JL-2]
ATGAACGAGGAGAAGAAGAAGGCCCTAGAGAACGCGCTTAAGACCATAGAAAAGACCTTTGGCAAGGGCGCCGTCATGCG
CCTGGGGGAGGTGCCCAAGCTCCAGGTGGACGTGATCCCCACGGGCTCCTTGGGCCTGGACCTGGCCCTAGGCATCGGGG
GGATTCCCCGGGGGCGGATCATCGAGATCTACGGCCCCGAGTCCGGGGGCAAGACCACCTTGGCCCTCACCATCATCGCC
CAGGCCCAGAAGCAGGGAGGGGTGGCGGCCTTCGTGGACGCGGAGCACGCCCTGGATCCCCTTTACGCCGCCAAGCTCGG
GGTGAACCTGGAAGACCTCCTGGTCTCCCAGCCGGACACCGGGGAGCAGGCCCTGGAGATCGTGGAGCTCCTGGCCCGTT
CGGGGGCGGTGGACGTCATCGTGGTGGACTCCGTGGCCGCCCTGGTGCCCCGGGCGGAGATCGAGGGGGAGATGGGGGAC
CAGCACGTGGGCCTCCAGGCGAGGCTCATGAGCCAGGCCCTGAGGAAGCTCACCGCGGTGCTCTCCAAGAGCAACACCGC
GGCCATCTTCATCAACCAGGTGCGGGAGAAGGTGGGGGTGATGTACGGCAACCCCGAGACCACCCCCGGGGGCCGGGCGC
TCAAGTTTTACTCCAGCGTCCGCCTGGACGTGCGCAAAAGCGGCCAGCCCATCAAGGTGGGCAACGAGGCCGTGGGCATC
CGGGTGAAGGTGAAGGTGGTGAAGAACAAGCTGGCCCCGCCCTTTAGGGAGACGGAGCTGGAGATCTACTTCGGCCGGGG
CCTGGACCCGGTGATGGACCTGGTGAACGTGGCCGTGGCCGCGGGGGTCATAGAGAAGGCGGGCTCCTGGTTCTCCTACG
GGGAAAGCCGCTTAGGCCAGGGCAAGGAGAAGGCCGCGGACTACCTCCGGGAGCGCCCCGAGCTTCTGGAGGAGATCCGG
GCCAAGGTGCTGGAGCGGGCGAACGAGGTGGTCCTGGTGGCCTCGGAGGACGAGGGGGCGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7RFC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

70.497

94.706

0.668
  recA Pseudomonas stutzeri DSM 10701

61.988

100

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

100

0.621
  recA Glaesserella parasuis strain SC1401

60.472

99.706

0.603
  recA Streptococcus pyogenes NZ131

62.883

95.882

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

63.158

95

0.6
  recA Streptococcus mutans UA159

62.963

95.294

0.6
  recA Acinetobacter baumannii D1279779

59.184

100

0.597
  recA Streptococcus pneumoniae R6

62.848

95

0.597
  recA Streptococcus mitis NCTC 12261

62.848

95

0.597
  recA Streptococcus pneumoniae Rx1

62.848

95

0.597
  recA Streptococcus pneumoniae D39

62.848

95

0.597
  recA Streptococcus pneumoniae TIGR4

62.848

95

0.597
  recA Streptococcus mitis SK321

62.848

95

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

62.305

94.412

0.588
  recA Ralstonia pseudosolanacearum GMI1000

61.043

95.882

0.585
  recA Acinetobacter baylyi ADP1

61.043

95.882

0.585
  recA Helicobacter pylori 26695

59.403

98.529

0.585
  recA Helicobacter pylori strain NCTC11637

59.403

98.529

0.585
  recA Lactococcus lactis subsp. cremoris KW2

59.05

99.118

0.585
  recA Vibrio cholerae strain A1552

60.923

95.588

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

95.588

0.582
  recA Neisseria gonorrhoeae strain FA1090

61.111

95.294

0.582
  recA Neisseria gonorrhoeae MS11

61.111

95.294

0.582
  recA Neisseria gonorrhoeae MS11

61.111

95.294

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.788

97.059

0.571

Multiple sequence alignment