Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JYK05_RS02125 Genome accession   NZ_CP071129
Coordinates   448875..449945 (+) Length   356 a.a.
NCBI ID   WP_175939548.1    Uniprot ID   -
Organism   Caballeronia sp. M1242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 443875..454945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYK05_RS02110 (JYK05_02110) - 444418..446076 (-) 1659 WP_175939545.1 MFS transporter -
  JYK05_RS02115 (JYK05_02115) - 446306..447889 (-) 1584 WP_206467611.1 sensor histidine kinase -
  JYK05_RS02120 (JYK05_02120) - 447902..448612 (-) 711 WP_206467612.1 response regulator transcription factor -
  JYK05_RS02125 (JYK05_02125) recA 448875..449945 (+) 1071 WP_175939548.1 recombinase RecA Machinery gene
  JYK05_RS02130 (JYK05_02130) recX 450256..451143 (+) 888 WP_371826394.1 recombination regulator RecX -
  JYK05_RS02135 (JYK05_02135) - 451266..451892 (+) 627 WP_206467614.1 DUF2889 domain-containing protein -
  JYK05_RS02140 (JYK05_02140) sucC 452013..453179 (+) 1167 WP_175939551.1 ADP-forming succinate--CoA ligase subunit beta -
  JYK05_RS02145 (JYK05_02145) sucD 453278..454159 (+) 882 WP_175939552.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37924.43 Da        Isoelectric Point: 4.9608

>NTDB_id=542959 JYK05_RS02125 WP_175939548.1 448875..449945(+) (recA) [Caballeronia sp. M1242]
MEESKKGPAGMTAEKSKALAAALSQIEKQFGKGSIMRLGAGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKIGGTAAFIDAEHALDVQYAQKLGVNVQELLISQPDTGEQALEIADALVRSGSIDMIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKLVDKAGAWYSYNGDRIGQGKDNAREFLR
ENPDIAREIENKIRESLGVAALADGVAAGAAVADDE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=542959 JYK05_RS02125 WP_175939548.1 448875..449945(+) (recA) [Caballeronia sp. M1242]
ATGGAAGAAAGCAAGAAAGGCCCGGCTGGCATGACTGCGGAGAAGAGCAAGGCCCTCGCTGCCGCGCTCTCGCAGATCGA
AAAGCAATTCGGCAAAGGGTCGATCATGCGGCTCGGCGCGGGTGAGGCGGTCGAAGACATTCAGGTTGTGTCCACCGGCT
CGCTCGGACTGGATATCGCGCTCGGCGTGGGCGGCCTGCCGCGCGGCCGCGTCGTCGAGATCTACGGTCCGGAATCGTCG
GGCAAGACCACGCTCACGCTGCAGGTGATCGCCGAAATGCAGAAGATCGGCGGCACGGCGGCATTCATCGACGCGGAACA
CGCGCTCGACGTGCAATACGCGCAGAAGCTCGGCGTGAACGTGCAGGAACTGCTGATCTCGCAGCCGGACACGGGCGAAC
AGGCGCTGGAAATCGCGGACGCGCTGGTGCGCTCGGGTTCCATCGACATGATCGTGATCGACTCCGTCGCGGCGCTCGTG
CCGAAGGCGGAAATCGAAGGCGAAATGGGCGACTCACTGCCGGGTCTGCAAGCTCGCCTGATGTCGCAGGCGCTGCGCAA
GCTCACCGGCACCATCAAGCGCACGAACTGCCTCGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCAACCCGGAAACCACCACGGGCGGTAACGCGCTGAAGTTCTATTCGTCGGTGCGTCTGGACATTCGCCGTATCGGGTCC
ATCAAGAAGAACGACGAAGTGATCGGCAACGAAACGCGCGTGAAGGTGGTGAAGAACAAGGTGTCGCCGCCGTTCCGCGA
AGCCATCTTCGACATTCTGTACGGTGAGGGCATTTCGCGTCAGGGCGAGATCATCGACCTGGGCGTGCAGGCCAAGCTCG
TCGACAAGGCGGGCGCGTGGTACAGCTATAACGGCGATCGCATCGGTCAGGGCAAGGACAACGCGCGGGAATTCCTGCGC
GAGAACCCGGACATTGCACGCGAGATCGAGAACAAGATCCGCGAATCGCTGGGTGTGGCGGCGCTGGCAGATGGCGTCGC
CGCGGGCGCAGCAGTCGCGGACGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.088

96.067

0.817
  recA Acinetobacter baylyi ADP1

72.781

94.944

0.691
  recA Neisseria gonorrhoeae MS11

74.164

92.416

0.685
  recA Neisseria gonorrhoeae MS11

74.164

92.416

0.685
  recA Neisseria gonorrhoeae strain FA1090

74.164

92.416

0.685
  recA Acinetobacter baumannii D1279779

69.942

97.191

0.68
  recA Pseudomonas stutzeri DSM 10701

72.81

92.978

0.677
  recA Vibrio cholerae strain A1552

69.565

96.91

0.674
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.565

96.91

0.674
  recA Glaesserella parasuis strain SC1401

69.477

96.629

0.671
  recA Bacillus subtilis subsp. subtilis str. 168

66.361

91.854

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

92.416

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.69

94.382

0.601
  recA Helicobacter pylori 26695

64.724

91.573

0.593
  recA Helicobacter pylori strain NCTC11637

64.417

91.573

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

62.805

92.135

0.579
  recA Streptococcus mitis SK321

58.79

97.472

0.573
  recA Streptococcus mutans UA159

61.515

92.697

0.57
  recA Streptococcus mitis NCTC 12261

60.423

92.978

0.562
  recA Lactococcus lactis subsp. cremoris KW2

60.06

93.539

0.562
  recA Streptococcus pneumoniae Rx1

60.121

92.978

0.559
  recA Streptococcus pneumoniae D39

60.121

92.978

0.559
  recA Streptococcus pneumoniae R6

60.121

92.978

0.559
  recA Streptococcus pneumoniae TIGR4

60.121

92.978

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.169

0.553
  recA Streptococcus pyogenes NZ131

59.878

92.416

0.553