Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JY391_RS05025 Genome accession   NZ_CP071070
Coordinates   1059614..1060675 (+) Length   353 a.a.
NCBI ID   WP_042288561.1    Uniprot ID   -
Organism   Citrobacter sedlakii strain 3347689II     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1054614..1065675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY391_RS04995 (JY391_04995) srlD 1054778..1055557 (-) 780 WP_042288575.1 sorbitol-6-phosphate dehydrogenase -
  JY391_RS05000 (JY391_05000) srlB 1055568..1055930 (-) 363 WP_042288572.1 PTS glucitol/sorbitol transporter subunit IIA -
  JY391_RS05005 (JY391_05005) - 1055942..1056916 (-) 975 WP_042288569.1 PTS glucitol/sorbitol transporter subunit IIB -
  JY391_RS05010 (JY391_05010) srlA 1056913..1057476 (-) 564 WP_042288566.1 PTS glucitol/sorbitol transporter subunit IIC -
  JY391_RS05015 (JY391_05015) mltB 1057742..1058821 (+) 1080 WP_211935322.1 lytic murein transglycosylase B -
  JY391_RS05020 (JY391_05020) pncC 1059024..1059521 (+) 498 WP_060569425.1 nicotinamide-nucleotide amidase -
  JY391_RS05025 (JY391_05025) recA 1059614..1060675 (+) 1062 WP_042288561.1 recombinase RecA Machinery gene
  JY391_RS05030 (JY391_05030) recX 1060790..1061290 (+) 501 WP_211935323.1 recombination regulator RecX -
  JY391_RS05035 (JY391_05035) alaS 1061506..1064133 (+) 2628 WP_211935324.1 alanine--tRNA ligase -
  JY391_RS05040 (JY391_05040) csrA 1064497..1064682 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37940.30 Da        Isoelectric Point: 4.7456

>NTDB_id=542665 JY391_RS05025 WP_042288561.1 1059614..1060675(+) (recA) [Citrobacter sedlakii strain 3347689II]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETIPTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATAWLKENPATAKEI
EKKVRELLLNNQDSTPDFSVDDGEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=542665 JY391_RS05025 WP_042288561.1 1059614..1060675(+) (recA) [Citrobacter sedlakii strain 3347689II]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAAATTGAAAAGCAATTTGGTAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGCTCTATGGATGTGGAAACCATCCCGACCGGATCGCTTTCTCTGGATATCGCACTCGGCG
CGGGCGGTCTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCGGAATCTTCCGGTAAAACCACCCTGACGCTGCAGGTG
ATTGCCGCTGCGCAGCGTGAAGGGAAAACCTGTGCGTTTATCGATGCGGAACATGCGCTGGATCCAATCTATGCGCGCAA
GCTGGGCGTTGATATTGACAACCTGCTGTGTTCTCAGCCGGACACCGGCGAACAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCTGGCGCTGTAGACGTTATCGTTGTCGACTCCGTCGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATTCGTATGAAAATTGGCGTTATGTTCGGTAACCCGGAAACCACTACCGGGGGGA
ACGCGCTGAAATTCTACGCCTCTGTTCGACTGGACATCCGCCGTATCGGCGCGGTGAAAGAGGGCGATAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCCGCACCGTTCAAACAGGCAGAGTTCCAGATCCTCTACGGTGA
AGGCATCAACTTCTATGGCGAACTGGTTGATCTGGGCGTCAAAGAGAAGCTGATTGAGAAAGCCGGTGCTTGGTACAGCT
ACAACGGTGAGAAAATCGGGCAGGGTAAAGCGAATGCGACCGCCTGGTTGAAAGAAAACCCGGCTACCGCGAAAGAGATC
GAGAAAAAGGTTCGCGAGCTGCTGCTCAACAACCAGGACTCAACGCCAGATTTCTCCGTTGATGACGGTGAAGGTGTTGC
AGAAACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.988

93.768

0.788
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

93.768

0.788
  recA Pseudomonas stutzeri DSM 10701

73.887

95.467

0.705
  recA Acinetobacter baumannii D1279779

74.618

92.635

0.691
  recA Acinetobacter baylyi ADP1

74.312

92.635

0.688
  recA Glaesserella parasuis strain SC1401

68.3

98.3

0.671
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.712

92.351

0.635
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.102

0.626
  recA Streptococcus mitis SK321

59.714

99.15

0.592
  recA Streptococcus mitis NCTC 12261

59.714

99.15

0.592
  recA Streptococcus pneumoniae D39

59.77

98.584

0.589
  recA Streptococcus pneumoniae TIGR4

59.77

98.584

0.589
  recA Streptococcus pneumoniae R6

59.77

98.584

0.589
  recA Streptococcus pneumoniae Rx1

59.77

98.584

0.589
  recA Helicobacter pylori strain NCTC11637

61.424

95.467

0.586
  recA Helicobacter pylori 26695

61.128

95.467

0.584
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.501

0.572
  recA Streptococcus pyogenes NZ131

62.154

92.068

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.935

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

91.785

0.569
  recA Streptococcus mutans UA159

61.846

92.068

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

94.051

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.068

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.935

0.552