Detailed information NTG0542371

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LNN46_RS21960
• Genome accession: NZ_CP086480
• Coordinates: 4586082..4587107 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain Ec-050-T20-MAC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4581082..4592107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LNN46_RS21940 (LNN46_21945)	metJ	4582143..4582460 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LNN46_RS21945 (LNN46_21950)	yiiX	4582644..4583252 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LNN46_RS21950 (LNN46_21955)	rpmE	4583313..4583525 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LNN46_RS21955 (LNN46_21960)	priA	4583728..4585926 (+)	2199	WP_001333520.1	primosomal protein N'	Machinery gene
LNN46_RS21960 (LNN46_21965)	cytR	4586082..4587107 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LNN46_RS21965 (LNN46_21970)	ftsN	4587199..4588158 (+)	960	WP_000068828.1	cell division protein FtsN	-
LNN46_RS21970 (LNN46_21975)	hslV	4588251..4588781 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LNN46_RS21975 (LNN46_21980)	hslU	4588791..4590122 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LNN46_RS21980 (LNN46_21985)	menA	4590189..4591115 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LNN46_RS21985 (LNN46_21990)	rraA	4591208..4591693 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LNN46_RS21990 (LNN46_21995)	zapB	4591778..4592023 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=542371 LNN46_RS21960 WP_000644904.1 4586082..4587107(+) (cytR) [Escherichia coli strain Ec-050-T20-MAC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=542371 LNN46_RS21960 WP_000644904.1 4586082..4587107(+) (cytR) [Escherichia coli strain Ec-050-T20-MAC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628