Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JYG36_RS21180 Genome accession   NZ_CP071007
Coordinates   4621826..4622893 (-) Length   355 a.a.
NCBI ID   WP_093386547.1    Uniprot ID   -
Organism   Pseudomonas sp. SORT22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4616826..4627893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG36_RS21145 (JYG36_21145) - 4616911..4617276 (-) 366 WP_038996675.1 diacylglycerol kinase -
  JYG36_RS21150 (JYG36_21150) erdR 4617352..4618002 (-) 651 WP_093386534.1 response regulator transcription factor ErdR -
  JYG36_RS21155 (JYG36_21155) - 4618264..4618974 (-) 711 WP_045193563.1 tRNA-uridine aminocarboxypropyltransferase -
  JYG36_RS21160 (JYG36_21160) - 4619210..4619626 (+) 417 WP_045193564.1 quorum-sensing-regulated virulence factor family protein -
  JYG36_RS21165 (JYG36_21165) - 4619632..4619832 (-) 201 WP_093386538.1 hypothetical protein -
  JYG36_RS21170 (JYG36_21170) - 4620227..4621345 (+) 1119 WP_045193566.1 LOG family protein -
  JYG36_RS21175 (JYG36_21175) recX 4621350..4621817 (-) 468 WP_045193567.1 recombination regulator RecX -
  JYG36_RS21180 (JYG36_21180) recA 4621826..4622893 (-) 1068 WP_093386547.1 recombinase RecA Machinery gene
  JYG36_RS21185 (JYG36_21185) - 4622997..4623479 (-) 483 WP_045193569.1 nicotinamide-nucleotide amidohydrolase family protein -
  JYG36_RS21190 (JYG36_21190) - 4623494..4624066 (-) 573 WP_213602206.1 hypothetical protein -
  JYG36_RS21195 (JYG36_21195) - 4624094..4625395 (-) 1302 WP_045193571.1 colicin-like pore-forming protein -
  JYG36_RS21200 (JYG36_21200) - 4625439..4625939 (-) 501 WP_093386562.1 lysis system i-spanin subunit Rz -
  JYG36_RS21205 (JYG36_21205) - 4625936..4626481 (-) 546 WP_045193573.1 glycoside hydrolase family 19 protein -
  JYG36_RS21210 (JYG36_21210) - 4626505..4627557 (-) 1053 WP_045193574.1 contractile injection system protein, VgrG/Pvc8 family -
  JYG36_RS21215 (JYG36_21215) - 4627626..4627832 (-) 207 WP_093386571.1 tail protein X -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37795.21 Da        Isoelectric Point: 5.5277

>NTDB_id=542176 JYG36_RS21180 WP_093386547.1 4621826..4622893(-) (recA) [Pseudomonas sp. SORT22]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGFLEKSGAWYSYQGSKIGQGKANSAKFLQENPEIAATLEK
QIRDKLLNAGAVEAAGKAAAVNAEPEDETEAEAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=542176 JYG36_RS21180 WP_093386547.1 4621826..4622893(-) (recA) [Pseudomonas sp. SORT22]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGGCAAATCGAGCGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCGATTCCGGCCATTTCCACCGGCTCCCTGGGCCTGGACATTGCCCTGGGCATTGGCG
GTCTGCCAAAAGGTCGTATCGTCGAAATCTACGGCCCTGAGTCGTCGGGTAAAACCACCCTGACCCTGTCGGTCATCGCC
CAGGCGCAGAAAGCCGGAGCTACCTGTGCCTTCGTCGACGCCGAGCACGCCCTGGACCCGGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCGCAGCCGGATACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTGCCCAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTCGTTGGTAGCGAA
ACCCGGGTCAAAATCGTCAAGAACAAGGTGGCGCCGCCATTCCGTCAGGCTGAATTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATTGACCTCGGCGTGCTGCACGGCTTCCTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCAGCCAAGTTCCTCCAGGAGAACCCGGAAATCGCCGCGACGCTCGAGAAG
CAGATCCGCGACAAGCTGCTCAATGCCGGCGCCGTTGAAGCGGCTGGCAAGGCTGCAGCGGTTAACGCCGAGCCTGAAGA
CGAAACCGAAGCTGAAGCCGGCTACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

92.049

92.113

0.848
  recA Acinetobacter baylyi ADP1

73.011

99.155

0.724
  recA Acinetobacter baumannii D1279779

71.714

98.592

0.707
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.305

92.394

0.696
  recA Vibrio cholerae strain A1552

75.305

92.394

0.696
  recA Glaesserella parasuis strain SC1401

70.977

98.028

0.696
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

71.605

91.268

0.654
  recA Neisseria gonorrhoeae MS11

71.605

91.268

0.654
  recA Neisseria gonorrhoeae strain FA1090

71.605

91.268

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

92.113

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

94.085

0.583
  recA Helicobacter pylori strain NCTC11637

61.774

92.113

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

61.027

93.239

0.569
  recA Helicobacter pylori 26695

61.162

92.113

0.563
  recA Streptococcus mutans UA159

59.385

91.549

0.544
  recA Streptococcus pneumoniae D39

58.589

91.831

0.538
  recA Streptococcus pneumoniae Rx1

58.589

91.831

0.538
  recA Streptococcus pneumoniae R6

58.589

91.831

0.538
  recA Streptococcus pneumoniae TIGR4

58.589

91.831

0.538
  recA Streptococcus pyogenes NZ131

57.317

92.394

0.53
  recA Streptococcus mitis SK321

58.204

90.986

0.53
  recA Streptococcus mitis NCTC 12261

58.204

90.986

0.53
  recA Latilactobacillus sakei subsp. sakei 23K

58.255

90.423

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

91.831

0.521
  recA Lactococcus lactis subsp. cremoris KW2

56.037

90.986

0.51