Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JYA46_RS04045 Genome accession   NZ_CP070991
Coordinates   777874..778917 (-) Length   347 a.a.
NCBI ID   WP_072491554.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBS2016-05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 772874..783917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS04030 (JYA46_000806) - 774478..775275 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  JYA46_RS04035 (JYA46_000807) - 775449..775664 (+) 216 WP_000026308.1 hypothetical protein -
  JYA46_RS04040 (JYA46_000808) rny 775961..777520 (-) 1560 WP_001050913.1 ribonuclease Y -
  JYA46_RS04045 (JYA46_000809) recA 777874..778917 (-) 1044 WP_072491554.1 recombinase RecA Machinery gene
  JYA46_RS04050 (JYA46_000810) - 779082..780233 (-) 1152 WP_072491553.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  JYA46_RS04055 (JYA46_000811) pgsA 780458..781036 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JYA46_RS04060 (JYA46_000812) - 781070..781462 (-) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  JYA46_RS04065 (JYA46_000813) - 781481..782308 (-) 828 WP_000214890.1 YmfK family protein -
  JYA46_RS04070 (JYA46_000814) - 782413..783117 (-) 705 WP_000646224.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37642.50 Da        Isoelectric Point: 4.8475

>NTDB_id=541974 JYA46_RS04045 WP_072491554.1 777874..778917(-) (recA) [Staphylococcus aureus strain CBS2016-05]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEETEDAPKSLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=541974 JYA46_RS04045 WP_072491554.1 777874..778917(-) (recA) [Staphylococcus aureus strain CBS2016-05]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTAATGAA
GTTGGGTGACAATATAGGTCGCCGAGTTTCAACTACATCAACTGGTTCAGTTACATTAGATAATGCGCTAGGTGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATTTATGGTCCTGAAAGTTCTGGTAAGACAACAGTAGCGCTTCACGCTATTGCT
GAAGTTCAAAGTAATGGCGGGGTGGCAGCATTTATCGATGCTGAACATGCTTTAGACCCAGAATATGCTCAAGCATTAGG
CGTAGATATCGATAATTTATATTTATCGCAACCGGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCATTTGTTAGAA
GTGGTGCAGTTGATATTGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGAGAAATGGGAGAC
ACTCACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCGTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATACAAC
TGCTATTTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCAGAGACTACACCAGGTGGACGTGCTT
TAAAATTCTATAGTTCAGTAAGACTAGAAGTACGTCGTGCAGAACAGCTTAAACAAGGACAAGACATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTGGCACCACCATTTAGAGTAGCTGAAGTTGATATTATGTATGGACAAGGTAT
TTCTAAAGAGGGTGAACTTATTGATTTAGGTGTTGAAAACGACATCGTTGATAAATCAGGAGCATGGTATTCTTACAATG
GCGAACGAATGGGTCAAGGTAAGGAAAATGTTAAAATGTACTTGAAAGAAAACCCACAAATTAAAGAAGAAATTGATCGT
AAATTGAGAGAAAAATTAGGTATATCTGATGGTGATGTTGAAGAAACAGAAGATGCACCAAAGTCATTATTTGACGAAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.737

95.389

0.732
  recA Latilactobacillus sakei subsp. sakei 23K

70.501

97.695

0.689
  recA Streptococcus pneumoniae Rx1

64.943

100

0.651
  recA Streptococcus pneumoniae R6

64.943

100

0.651
  recA Streptococcus pneumoniae D39

64.943

100

0.651
  recA Streptococcus pneumoniae TIGR4

64.943

100

0.651
  recA Streptococcus pyogenes NZ131

68.389

94.813

0.648
  recA Streptococcus mutans UA159

64

100

0.646
  recA Streptococcus mitis SK321

64.553

100

0.646
  recA Acinetobacter baumannii D1279779

64.08

100

0.643
  recA Acinetobacter baylyi ADP1

63.977

100

0.64
  recA Neisseria gonorrhoeae MS11

64.897

97.695

0.634
  recA Neisseria gonorrhoeae strain FA1090

64.897

97.695

0.634
  recA Neisseria gonorrhoeae MS11

64.897

97.695

0.634
  recA Streptococcus mitis NCTC 12261

66.066

95.965

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.602

97.695

0.631
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.389

0.625
  recA Helicobacter pylori 26695

63.636

98.271

0.625
  recA Helicobacter pylori strain NCTC11637

63.636

98.271

0.625
  recA Vibrio cholerae strain A1552

65.337

93.948

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

93.948

0.614
  recA Ralstonia pseudosolanacearum GMI1000

65.287

90.49

0.591
  recA Pseudomonas stutzeri DSM 10701

60.714

96.83

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.389

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.219

0.565
  recA Glaesserella parasuis strain SC1401

60.372

93.084

0.562