Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JYG33_RS05600 Genome accession   NZ_CP070975
Coordinates   1197106..1198194 (-) Length   362 a.a.
NCBI ID   WP_207875034.1    Uniprot ID   -
Organism   Alcaligenes sp. SORT26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192106..1203194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG33_RS05580 (JYG33_05580) - 1192222..1192800 (-) 579 WP_222667181.1 DUF2889 domain-containing protein -
  JYG33_RS05585 (JYG33_05585) metE 1193068..1195368 (-) 2301 WP_207875032.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  JYG33_RS05590 (JYG33_05590) - 1195487..1196407 (+) 921 WP_207875033.1 LysR family transcriptional regulator -
  JYG33_RS05595 (JYG33_05595) recX 1196477..1196896 (-) 420 WP_243430284.1 recombination regulator RecX -
  JYG33_RS05600 (JYG33_05600) recA 1197106..1198194 (-) 1089 WP_207875034.1 recombinase RecA Machinery gene
  JYG33_RS05605 (JYG33_05605) - 1198401..1199090 (+) 690 WP_207875035.1 response regulator transcription factor -
  JYG33_RS05610 (JYG33_05610) - 1199101..1200564 (+) 1464 WP_207875036.1 sensor histidine kinase -
  JYG33_RS05615 (JYG33_05615) - 1200665..1202242 (+) 1578 WP_243430336.1 MFS transporter -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38823.46 Da        Isoelectric Point: 5.9874

>NTDB_id=541688 JYG33_RS05600 WP_207875034.1 1197106..1198194(-) (recA) [Alcaligenes sp. SORT26]
MDDKNSKAVASERSKALAAALTQIEKQFGKGSIMRYGDDNVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGK
TTLTLQVIAEMQKLKGTCAFIDAEHALDVQYAQKLGVNLGDLLISQPDTGEQALEITEALVRSGSVDLIVIDSVAALTPK
AEIEGDMGDSLPGLQARLMSQALRKLTATIKRANCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIK
RGDEMVGNETRVKVVKNKVAPPFKQTEFDIMYGSGISREGEIIDLGVQTAVVDKAGAWYSYDGNRIGQGKDNVREYLKER
PELAREIENKVREKLGVALMSAAVSRPASAAPAAAAAPEGEA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=541688 JYG33_RS05600 WP_207875034.1 1197106..1198194(-) (recA) [Alcaligenes sp. SORT26]
ATGGACGATAAAAATAGCAAAGCAGTGGCCTCGGAACGTTCCAAAGCGCTGGCCGCCGCTCTGACGCAAATCGAAAAGCA
GTTCGGCAAAGGCTCGATCATGCGTTATGGCGACGACAACGTCGAGCATGACATCCAGGTGGTCTCTACGGGTTCCTTGG
GTCTGGACATTGCCTTGGGCGTCGGTGGCTTGCCGCGCGGTCGCGTTATTGAAATTTATGGCCCGGAGTCCTCGGGTAAA
ACCACGCTGACCCTGCAAGTGATTGCAGAGATGCAAAAGCTCAAAGGCACCTGCGCCTTTATTGATGCCGAACACGCGCT
GGATGTGCAGTACGCCCAAAAACTGGGTGTGAACCTGGGCGATCTGCTGATCTCTCAGCCCGATACTGGCGAACAGGCTC
TGGAAATTACCGAAGCCCTGGTGCGCTCCGGTTCGGTTGACCTGATCGTGATCGACTCGGTGGCTGCCCTGACTCCCAAG
GCTGAAATCGAAGGCGATATGGGCGATTCCTTGCCCGGTCTGCAAGCCCGCCTGATGAGCCAGGCCTTGCGTAAATTGAC
GGCAACCATCAAGCGCGCCAATTGCATGGTTATCTTCATTAACCAGATTCGTATGAAGATTGGCGTCATGTTCGGCAACC
CTGAAACCACTACTGGTGGTAACGCACTGAAGTTTTACTCCTCCGTGCGTCTGGATATTCGCCGTATCGGTTCCATCAAG
CGTGGCGACGAAATGGTCGGTAACGAAACCCGCGTTAAAGTGGTCAAGAACAAGGTTGCGCCTCCCTTCAAGCAAACCGA
GTTCGACATCATGTACGGCAGCGGTATTTCCCGTGAAGGCGAAATTATCGACCTGGGCGTGCAGACGGCTGTGGTCGATA
AGGCCGGTGCCTGGTACAGCTACGACGGCAACCGCATTGGTCAGGGTAAAGACAATGTGCGCGAATACCTGAAAGAGCGT
CCCGAGTTGGCACGTGAAATCGAAAACAAGGTTCGCGAAAAGCTGGGTGTTGCCTTGATGAGCGCCGCTGTCAGCCGTCC
CGCTAGTGCTGCTCCTGCTGCCGCTGCGGCACCCGAGGGAGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.232

94.199

0.765
  recA Pseudomonas stutzeri DSM 10701

72.699

90.055

0.655
  recA Glaesserella parasuis strain SC1401

66.952

96.961

0.649
  recA Acinetobacter baumannii D1279779

72.446

89.227

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.827

89.227

0.641
  recA Acinetobacter baylyi ADP1

71.827

89.227

0.641
  recA Vibrio cholerae strain A1552

71.827

89.227

0.641
  recA Neisseria gonorrhoeae MS11

69.789

91.436

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.789

91.436

0.638
  recA Neisseria gonorrhoeae MS11

69.789

91.436

0.638
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.046

90.884

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

90.884

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

90.331

0.586
  recA Helicobacter pylori 26695

63.939

91.16

0.583
  recA Helicobacter pylori strain NCTC11637

63.636

91.16

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

89.227

0.564
  recA Streptococcus pneumoniae R6

60.714

92.818

0.564
  recA Streptococcus pneumoniae Rx1

60.714

92.818

0.564
  recA Streptococcus pneumoniae D39

60.714

92.818

0.564
  recA Streptococcus pneumoniae TIGR4

60.714

92.818

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

62.08

90.331

0.561
  recA Streptococcus mitis NCTC 12261

59.587

93.646

0.558
  recA Streptococcus mitis SK321

59.587

93.646

0.558
  recA Streptococcus pyogenes NZ131

59.701

92.541

0.552
  recA Streptococcus mutans UA159

58.333

92.818

0.541
  recA Lactococcus lactis subsp. cremoris KW2

56.637

93.646

0.53