Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JYA71_RS06740 Genome accession   NZ_CP070939
Coordinates   1403359..1404429 (+) Length   356 a.a.
NCBI ID   WP_003372329.1    Uniprot ID   A0A6B4JKS9
Organism   Clostridium botulinum strain ZJK-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1398359..1409429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA71_RS06725 (JYA71_06695) - 1398832..1401183 (+) 2352 WP_265859592.1 FtsK/SpoIIIE family DNA translocase -
  JYA71_RS06730 (JYA71_06700) rimO 1401285..1402625 (+) 1341 WP_265859593.1 30S ribosomal protein S12 methylthiotransferase RimO -
  JYA71_RS06735 (JYA71_06705) pgsA 1402609..1403199 (+) 591 WP_003374179.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JYA71_RS06740 (JYA71_06710) recA 1403359..1404429 (+) 1071 WP_003372329.1 recombinase RecA Machinery gene
  JYA71_RS06745 (JYA71_06715) rny 1404744..1406288 (+) 1545 WP_017826218.1 ribonuclease Y -
  JYA71_RS06750 (JYA71_06720) - 1406677..1406937 (+) 261 WP_003369307.1 stage V sporulation protein S -
  JYA71_RS06755 (JYA71_06725) - 1407063..1407323 (+) 261 WP_003373177.1 HPr family phosphocarrier protein -
  JYA71_RS06760 (JYA71_06730) - 1407479..1407703 (-) 225 WP_003374327.1 DUF378 domain-containing protein -
  JYA71_RS06765 (JYA71_06735) purB 1407874..1409304 (+) 1431 WP_260537557.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38466.94 Da        Isoelectric Point: 5.3607

>NTDB_id=541453 JYA71_RS06740 WP_003372329.1 1403359..1404429(+) (recA) [Clostridium botulinum strain ZJK-8]
MANIDINKLKAIENAMGQIEKQFGKGSVMKLGEDSVLNIDAISTGCLDLDIALGIGGVPKGRIVEIYGPESSGKTTIALH
IAAEAQKKGGAVGFIDAEHALDPSYARNLGVDTENLIVSQPDTGEQGLEIAEALVRSGAIDVIIVDSVAALVPKAEIEGE
MGDSHIGLQARLMSQALRKLAGTISKTNCIAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDVRRIDSIKQGDGIV
GNRTRIKVTKNKVAPPFKQAEFDIMYNEGISREGNIVDVGVKEEIVQKSGAWFSYGDIRLGQGRENAKQYLKENPEVALD
IENQIREKHNLPLMDAVIKETAQEVKGKENKEQSDK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=541453 JYA71_RS06740 WP_003372329.1 1403359..1404429(+) (recA) [Clostridium botulinum strain ZJK-8]
ATGGCTAATATAGATATAAATAAATTAAAAGCAATTGAAAATGCGATGGGACAAATAGAAAAGCAATTTGGTAAAGGTTC
AGTTATGAAATTAGGCGAAGATAGTGTATTAAATATTGATGCAATTTCAACAGGATGTTTAGATTTAGATATAGCACTTG
GAATTGGTGGAGTTCCAAAGGGTAGAATTGTTGAAATTTATGGACCAGAAAGTTCAGGTAAAACAACAATAGCTCTTCAC
ATAGCAGCAGAAGCACAAAAAAAAGGTGGGGCAGTAGGATTTATAGATGCAGAGCATGCATTAGATCCATCTTATGCAAG
AAACTTAGGTGTAGATACAGAAAATCTTATAGTTTCTCAACCTGATACAGGAGAACAAGGTCTTGAAATAGCAGAGGCAT
TAGTACGTTCAGGAGCAATTGATGTAATTATAGTTGATTCAGTTGCAGCATTAGTTCCTAAGGCCGAAATTGAAGGGGAG
ATGGGAGATTCTCATATAGGACTTCAAGCAAGATTAATGTCACAAGCTTTAAGAAAATTAGCAGGTACAATTAGCAAAAC
AAATTGTATAGCAATCTTTATTAATCAATTAAGAGAAAAAGTTGGAGTAATGTTTGGTTCACCTGAAACAACAACAGGAG
GAAGAGCATTGAAATTCTATGCTTCAGTAAGACTTGATGTGAGAAGAATAGATTCTATAAAACAAGGTGATGGTATCGTC
GGTAATAGAACAAGAATAAAAGTAACAAAGAACAAAGTAGCACCGCCTTTTAAACAAGCAGAATTTGATATAATGTATAA
CGAAGGTATTTCAAGAGAGGGTAATATAGTAGATGTTGGGGTTAAAGAAGAAATAGTACAAAAGAGTGGAGCATGGTTCT
CATATGGAGACATAAGGTTAGGTCAAGGTAGAGAAAATGCTAAACAATACTTAAAAGAAAATCCAGAAGTTGCATTAGAT
ATAGAAAATCAAATAAGAGAAAAACATAATCTTCCTTTAATGGATGCAGTAATAAAGGAAACAGCGCAAGAAGTTAAGGG
AAAAGAAAATAAGGAACAATCAGATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B4JKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.782

90.169

0.629
  recA Helicobacter pylori 26695

64.723

96.348

0.624
  recA Helicobacter pylori strain NCTC11637

64.723

96.348

0.624
  recA Ralstonia pseudosolanacearum GMI1000

66.159

92.135

0.61
  recA Pseudomonas stutzeri DSM 10701

66.769

91.292

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.127

95.225

0.601
  recA Vibrio cholerae strain A1552

63.127

95.225

0.601
  recA Acinetobacter baumannii D1279779

65.846

91.292

0.601
  recA Acinetobacter baylyi ADP1

65.846

91.292

0.601
  recA Streptococcus mutans UA159

60.684

98.596

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.432

91.011

0.596
  recA Glaesserella parasuis strain SC1401

66.144

89.607

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.329

92.135

0.593
  recA Neisseria gonorrhoeae MS11

65.421

90.169

0.59
  recA Neisseria gonorrhoeae MS11

65.421

90.169

0.59
  recA Neisseria gonorrhoeae strain FA1090

65.421

90.169

0.59
  recA Streptococcus pneumoniae TIGR4

60.172

98.034

0.59
  recA Streptococcus pneumoniae Rx1

60.172

98.034

0.59
  recA Streptococcus pneumoniae D39

60.172

98.034

0.59
  recA Streptococcus pneumoniae R6

60.172

98.034

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

65.409

89.326

0.584
  recA Streptococcus mitis SK321

63.497

91.573

0.581
  recA Lactococcus lactis subsp. cremoris KW2

63.497

91.573

0.581
  recA Streptococcus mitis NCTC 12261

63.19

91.573

0.579
  recA Streptococcus pyogenes NZ131

63.467

90.73

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.776

89.045

0.559