Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JW886_RS02705 Genome accession   NZ_CP070872
Coordinates   539974..541137 (+) Length   387 a.a.
NCBI ID   WP_200407054.1    Uniprot ID   A0AA45QRV3
Organism   Lactococcus taiwanensis strain K_LL004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 534974..546137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS02690 (JW886_02690) era 536159..537070 (+) 912 WP_003131632.1 GTPase Era -
  JW886_RS02695 (JW886_02695) asnB 537167..538759 (+) 1593 WP_205872256.1 asparagine synthase B -
  JW886_RS02700 (JW886_02700) mutM 538971..539795 (+) 825 WP_205872257.1 DNA-formamidopyrimidine glycosylase -
  JW886_RS02705 (JW886_02705) recA 539974..541137 (+) 1164 WP_200407054.1 recombinase RecA Machinery gene
  JW886_RS02710 (JW886_02710) - 541150..542514 (-) 1365 WP_205872258.1 amino acid permease -
  JW886_RS02715 (JW886_02715) - 542597..543967 (-) 1371 WP_075524823.1 amino acid permease -
  JW886_RS02720 (JW886_02720) - 544116..544499 (+) 384 WP_200407055.1 YlbF family regulator -
  JW886_RS02725 (JW886_02725) - 544483..544797 (+) 315 WP_196756710.1 DUF2129 domain-containing protein -
  JW886_RS02730 (JW886_02730) - 544997..545515 (+) 519 WP_205271707.1 dithiol-disulfide isomerase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 41255.96 Da        Isoelectric Point: 5.2668

>NTDB_id=541200 JW886_RS02705 WP_200407054.1 539974..541137(+) (recA) [Lactococcus taiwanensis strain K_LL004]
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSV
AALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTQVGKETKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLKIAVDEGIIKKSGAWFAYNDEKIGQGA
EKAKAFLKEHQEIFDEIDHKIRSTHGLLGDTEGVEETNDGTTAKTKTSKAKKTDSAESEEIELELED

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=541200 JW886_RS02705 WP_200407054.1 539974..541137(+) (recA) [Lactococcus taiwanensis strain K_LL004]
TTGGCAACAAAGAAAAAAACAAATTTTGATGATATTACCAAAAAATATGGCGCTGAGCGTGACAAAGCTTTGGCAGATGC
ACTTGCTCTGATTGAAAAAGACTTTGGGAAAGGTTCACTTATGCGTCTTGGCGAAGCAGCCAACCAAAAAGTGTCAGTAG
TAAGTTCAGGCTCACTTGCACTTGATATTGCGCTTGGTGCAGGTGGTTATCCTAAAGGACGTATCGTTGAAATCTATGGA
CCAGAATCTTCTGGTAAAACAACAGTTGCGCTTCATGCCGTTGCAGCGGTTCAAAAAGAAGGTGGCATTGCAGCCTTTAT
CGATGCTGAAAATGCGCTTGACCCAGAATATGCAAAAGCGCTCGGTGTCAATATCGATGAACTTTTACTTTCACAACCAG
ACTATGGTGAACAAGGGCTTCAGATTGCTGAAAAATTGATTACATCTGGTGCAGTTGACTTGGTTGTTATTGACTCAGTT
GCAGCTTTGGTACCTAAAGCCGAAATTGACGGTGAAATTGGTGACAGTTCAGTTGGGCTTCAAGCTCGTATGATGTCACA
AGCCATGCGTAAACTTGCAGGACATATTAATAAAACAAAAACAACAGCAATTTTCATCAACCAATTGCGTGAAAAAGTTG
GGGTTATGTTTGGTTCGCCAGAAACAACACCTGGTGGTCGTGCGTTGAAATTCTATGCATCTGTACGTCTTGATGTTCGT
GGATCAACAAAGATTGAAGAAGGGTCTGGCGATAATAAGACTCAAGTGGGTAAAGAAACAAAAATCAAAGTTGTAAAAAA
TAAAGTCGCTCCACCATTCAAAGTCGCATTAGTTGATATTATGTTTGGTGAAGGAATCTCAAAAACAGGTGAATTACTAA
AAATTGCTGTCGATGAGGGGATTATCAAGAAATCAGGGGCTTGGTTTGCTTACAACGATGAGAAAATTGGTCAAGGAGCT
GAAAAAGCTAAAGCATTCCTCAAGGAACATCAAGAAATTTTTGATGAAATCGACCACAAAATTCGTTCTACACATGGTCT
CTTAGGCGACACAGAGGGTGTAGAGGAGACGAACGATGGGACAACTGCTAAAACGAAAACCTCTAAAGCTAAAAAGACTG
ATTCAGCAGAATCAGAAGAAATTGAACTAGAACTTGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

96.023

90.956

0.873
  recA Streptococcus pneumoniae Rx1

75.844

99.483

0.755
  recA Streptococcus pneumoniae D39

75.844

99.483

0.755
  recA Streptococcus pneumoniae R6

75.844

99.483

0.755
  recA Streptococcus pneumoniae TIGR4

75.844

99.483

0.755
  recA Streptococcus mitis NCTC 12261

75.325

99.483

0.749
  recA Streptococcus mitis SK321

74.607

98.708

0.736
  recA Streptococcus mutans UA159

73.698

99.225

0.731
  recA Streptococcus pyogenes NZ131

78.674

89.664

0.705
  recA Latilactobacillus sakei subsp. sakei 23K

68.085

85.013

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

65.875

87.08

0.574
  recA Glaesserella parasuis strain SC1401

58.382

89.406

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

85.013

0.522
  recA Vibrio cholerae strain A1552

61.92

83.463

0.517
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

83.463

0.517
  recA Neisseria gonorrhoeae strain FA1090

60.241

85.788

0.517
  recA Neisseria gonorrhoeae MS11

60.241

85.788

0.517
  recA Neisseria gonorrhoeae MS11

60.241

85.788

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.333

86.822

0.506
  recA Helicobacter pylori strain NCTC11637

58.663

85.013

0.499
  recA Helicobacter pylori 26695

58.663

85.013

0.499
  recA Acinetobacter baumannii D1279779

59.752

83.463

0.499
  recA Acinetobacter baylyi ADP1

59.752

83.463

0.499
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.443

83.463

0.496
  recA Ralstonia pseudosolanacearum GMI1000

60.568

81.912

0.496
  recA Pseudomonas stutzeri DSM 10701

58.951

83.721

0.494