Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JW975_RS13820 Genome accession   NZ_CP070865
Coordinates   3081610..3082683 (-) Length   357 a.a.
NCBI ID   WP_011788615.1    Uniprot ID   A1RHG3
Organism   Shewanella putrefaciens strain XY07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3076610..3087683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW975_RS13805 (JW975_13805) - 3076891..3078147 (-) 1257 WP_011788618.1 aspartate kinase -
  JW975_RS13810 (JW975_13810) alaS 3078157..3080781 (-) 2625 WP_128090272.1 alanine--tRNA ligase -
  JW975_RS13815 (JW975_13815) - 3081122..3081592 (-) 471 WP_373291696.1 regulatory protein RecX -
  JW975_RS13820 (JW975_13820) recA 3081610..3082683 (-) 1074 WP_011788615.1 recombinase RecA Machinery gene
  JW975_RS13825 (JW975_13825) mutS 3083066..3085636 (+) 2571 WP_061782789.1 DNA mismatch repair protein MutS -
  JW975_RS13830 (JW975_13830) rpoS 3085733..3086713 (-) 981 WP_011788613.1 RNA polymerase sigma factor RpoS -
  JW975_RS13835 (JW975_13835) - 3086795..3087679 (-) 885 WP_061782788.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38047.45 Da        Isoelectric Point: 4.8722

>NTDB_id=541120 JW975_RS13820 WP_011788615.1 3081610..3082683(-) (recA) [Shewanella putrefaciens strain XY07]
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSALASSASDDESTEGNIDLETGEIF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=541120 JW975_RS13820 WP_011788615.1 3081610..3082683(-) (recA) [Shewanella putrefaciens strain XY07]
ATGAAGGTCGATCCAAACAAAGAGAAAGCACTCGCAGCGGTATTGAGCCAGATTGAAAAGCAATTTGGTAAAGGTTCTAT
CATGAAGCTGGGCGAAGATCGCTCTATGGATGTCGAAACCATTTCTACTGGTTCGTTATCTCTAGATGTCGCTTTAGGTG
CTGGTGGCTTGCCAATGGGGCGTATTGTTGAGATCTATGGTCCTGAATCATCTGGTAAAACGACACTGACTTTAGAAGTG
ATTGCCGCTGCGCAGCGTGAAGGTAAAACCTGTGCTTTTATCGATGCAGAACATGCGTTAGACCCAATCTATGCTAAAAA
ATTGGGCGTAGATATTGATAATTTGCTTTGTTCACAACCGGATACTGGCGAGCAAGCGCTTGAGATTTGCGATGCATTAA
CTCGCTCGGGGGCCGTTGATGTTATCGTGGTCGACTCAGTCGCAGCATTAACGCCTAAAGCTGAAATCGAAGGCGAAATT
GGTGATTCTCACATGGGCCTAGCGGCGCGTATGATGAGCCAAGCCATGCGTAAACTTGCTGGTAACTTGAAACAATCCAA
CACCTTACTTATCTTCATCAACCAAATTCGGATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACGACAACCGGTGGTA
ACGCGCTGAAGTTCTATGCTTCTGTTCGTTTGGATATTCGCCGCACAGGTGCCATTAAAGACGGCGATGAAGTTGTCGGT
AACGAAACTCGCGTTAAAGTGGTGAAAAACAAAGTTGCGGCTCCATTTAAGCAAGCTGAGTTCCAAATCCTTTACGGCCA
AGGTATTAACCGTACAGGTGAGTTAGTCGACTTAGGTGTAGCCCATAAGTTGATTGAAAAAGCGGGCGCTTGGTACAGCT
ATAAAGGTGATAAAATTGGCCAAGGTCGTGCAAATGCGGGTAAATATCTGACTGAAAACCCAGCAATTGCCGCCGAAATA
GACAAGACATTACGTGAGTTACTGTTAAGTAATCCAAGTGCCCTAGCATCATCTGCATCCGATGATGAAAGCACAGAAGG
TAATATTGACTTAGAGACAGGCGAAATATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1RHG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.899

96.639

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.899

96.639

0.801
  recA Pseudomonas stutzeri DSM 10701

72.434

95.518

0.692
  recA Acinetobacter baylyi ADP1

70.349

96.359

0.678
  recA Acinetobacter baumannii D1279779

70.381

95.518

0.672
  recA Glaesserella parasuis strain SC1401

68.286

98.039

0.669
  recA Ralstonia pseudosolanacearum GMI1000

69.325

91.317

0.633
  recA Neisseria gonorrhoeae MS11

69.659

90.476

0.63
  recA Neisseria gonorrhoeae MS11

69.659

90.476

0.63
  recA Neisseria gonorrhoeae strain FA1090

69.659

90.476

0.63
  recA Streptococcus mitis NCTC 12261

60.983

96.919

0.591
  recA Streptococcus pneumoniae TIGR4

63.72

91.877

0.585
  recA Streptococcus pneumoniae Rx1

63.72

91.877

0.585
  recA Streptococcus pneumoniae D39

63.72

91.877

0.585
  recA Streptococcus pneumoniae R6

63.72

91.877

0.585
  recA Streptococcus mitis SK321

63.11

91.877

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60

96.639

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

93.277

0.574
  recA Streptococcus pyogenes NZ131

61.89

91.877

0.569
  recA Streptococcus mutans UA159

61.585

91.877

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

89.916

0.563
  recA Helicobacter pylori strain NCTC11637

60.542

92.997

0.563
  recA Helicobacter pylori 26695

60.241

92.997

0.56
  recA Lactococcus lactis subsp. cremoris KW2

60.061

91.877

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

61.755

89.356

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.587

88.235

0.543