Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   TPH_RS05810 Genome accession   NC_018870
Coordinates   1177395..1178441 (+) Length   348 a.a.
NCBI ID   WP_015050261.1    Uniprot ID   K4LHF5
Organism   Thermacetogenium phaeum DSM 12270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1172395..1183441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TPH_RS05790 (Tph_c11540) - 1173282..1173833 (+) 552 WP_015050257.1 hypothetical protein -
  TPH_RS05795 (Tph_c11550) - 1173830..1175326 (+) 1497 WP_015050258.1 AAA family ATPase -
  TPH_RS05800 (Tph_c11560) - 1175456..1176727 (+) 1272 WP_028991034.1 competence/damage-inducible protein A -
  TPH_RS05805 (Tph_c11570) thpR 1176724..1177302 (+) 579 WP_015050260.1 RNA 2',3'-cyclic phosphodiesterase -
  TPH_RS05810 (Tph_c11580) recA 1177395..1178441 (+) 1047 WP_015050261.1 recombinase RecA Machinery gene
  TPH_RS05815 (Tph_c11590) rny 1178699..1180222 (+) 1524 WP_408033291.1 ribonuclease Y -
  TPH_RS05820 (Tph_c11600) - 1180596..1181117 (+) 522 WP_148275863.1 hypothetical protein -
  TPH_RS05825 (Tph_c11610) - 1181139..1181921 (+) 783 WP_015050264.1 TIGR00282 family metallophosphoesterase -
  TPH_RS05830 (Tph_c11620) spoVS 1182014..1182274 (+) 261 WP_015050265.1 stage V sporulation protein SpoVS -
  TPH_RS05835 (Tph_c11630) - 1182393..1183328 (+) 936 WP_015050266.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37649.19 Da        Isoelectric Point: 5.7816

>NTDB_id=54107 TPH_RS05810 WP_015050261.1 1177395..1178441(+) (recA) [Thermacetogenium phaeum DSM 12270]
MNDKLKALELALSHIEKAFGRGSIMRLGDTPAQLNVDVIPSGNLPLDLALGVGGIPRGRIIEIYGPESSGKTTVALHVVA
EAQKRGGMAAFIDAEHALDPVYAQALGVDIDNLYVSQPDTGEQALEITETLVRSGALDVIVIDSVAALVPRAELEGEMGD
AHVGLQARLMSQALRKLTGTISKTKTTAIFINQIREKVGVMFGNPEVTTGGRALKFYASVRLEVKKIDLIKQGTDIVGSR
TRIKVVKNKVAPPFKQVECDLMYGKGISREGGLLDLGLEFGIISKSGSWFAYGEERLGQGRENAKEFLREHPEIAQEIEQ
KIREVTSIKQGIFRTGSAFSDEDVTPQD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=54107 TPH_RS05810 WP_015050261.1 1177395..1178441(+) (recA) [Thermacetogenium phaeum DSM 12270]
ATGAACGACAAGCTCAAGGCTTTAGAGTTGGCGCTGTCTCATATTGAGAAAGCCTTTGGTAGGGGCTCCATTATGCGTTT
GGGGGATACGCCTGCTCAGCTCAATGTCGATGTGATCCCTTCGGGCAATCTCCCGCTGGATCTGGCCCTAGGGGTAGGCG
GGATACCGCGGGGAAGGATTATAGAGATTTATGGGCCCGAATCCTCTGGAAAAACGACCGTTGCCCTGCATGTGGTTGCT
GAAGCCCAAAAAAGAGGTGGAATGGCCGCCTTCATCGATGCCGAGCATGCCCTGGATCCTGTTTATGCCCAGGCTTTAGG
GGTCGACATCGATAACCTCTATGTCTCCCAGCCCGACACAGGTGAACAGGCTCTGGAGATCACGGAAACCCTTGTGCGCA
GCGGCGCTTTGGATGTTATCGTCATCGACTCCGTAGCTGCTTTGGTGCCCAGGGCTGAACTGGAGGGGGAAATGGGAGAT
GCTCATGTGGGCTTGCAGGCCCGCCTCATGTCTCAAGCCCTGAGGAAACTGACGGGTACCATTAGCAAGACCAAAACGAC
GGCCATTTTTATCAATCAGATCCGAGAAAAGGTAGGGGTAATGTTCGGCAATCCCGAAGTGACAACGGGTGGGAGAGCGC
TTAAGTTTTACGCATCAGTGCGCTTAGAAGTCAAAAAAATCGATTTAATTAAACAGGGAACGGATATCGTTGGTAGTAGG
ACGAGAATCAAGGTTGTTAAGAATAAGGTTGCCCCTCCCTTTAAACAGGTTGAATGTGATCTCATGTACGGTAAGGGTAT
TTCCCGGGAAGGAGGCCTCCTCGACTTAGGGTTGGAATTCGGTATTATCTCCAAATCGGGTTCATGGTTTGCTTACGGGG
AGGAGCGCTTGGGACAGGGACGTGAAAATGCCAAAGAATTTTTGAGGGAGCATCCGGAGATTGCCCAGGAGATAGAGCAG
AAAATCAGGGAAGTGACGAGCATAAAGCAGGGCATTTTCAGAACCGGAAGCGCGTTTAGTGATGAAGATGTTACCCCTCA
GGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K4LHF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.444

93.103

0.647
  recA Latilactobacillus sakei subsp. sakei 23K

68.502

93.966

0.644
  recA Streptococcus pneumoniae Rx1

65.839

92.529

0.609
  recA Streptococcus pneumoniae TIGR4

65.839

92.529

0.609
  recA Streptococcus pneumoniae R6

65.839

92.529

0.609
  recA Streptococcus pneumoniae D39

65.839

92.529

0.609
  recA Pseudomonas stutzeri DSM 10701

60.87

99.138

0.603
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.217

92.529

0.603
  recA Streptococcus mitis NCTC 12261

65.217

92.529

0.603
  recA Streptococcus mitis SK321

64.907

92.529

0.601
  recA Lactococcus lactis subsp. cremoris KW2

64.907

92.529

0.601
  recA Streptococcus pyogenes NZ131

63.804

93.678

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.918

94.54

0.595
  recA Ralstonia pseudosolanacearum GMI1000

66.129

89.08

0.589
  recA Streptococcus mutans UA159

62.883

93.678

0.589
  recA Neisseria gonorrhoeae MS11

61.631

95.115

0.586
  recA Neisseria gonorrhoeae MS11

61.631

95.115

0.586
  recA Neisseria gonorrhoeae strain FA1090

61.631

95.115

0.586
  recA Glaesserella parasuis strain SC1401

63.438

91.954

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

92.816

0.575
  recA Vibrio cholerae strain A1552

61.92

92.816

0.575
  recA Acinetobacter baumannii D1279779

61.491

92.529

0.569
  recA Helicobacter pylori 26695

61.3

92.816

0.569
  recA Helicobacter pylori strain NCTC11637

61.3

92.816

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

94.253

0.566
  recA Acinetobacter baylyi ADP1

60.681

92.816

0.563

Multiple sequence alignment