Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DCF50_RS01900 Genome accession   NC_018867
Coordinates   396859..397899 (+) Length   346 a.a.
NCBI ID   WP_015042386.1    Uniprot ID   K4LD43
Organism   Dehalobacter sp. CF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 391859..402899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCF50_RS01885 (DCF50_p374) rimO 393401..394726 (+) 1326 WP_015042383.1 30S ribosomal protein S12 methylthiotransferase RimO -
  DCF50_RS01890 (DCF50_p375) pgsA 394723..395286 (+) 564 WP_015042384.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DCF50_RS01895 (DCF50_p376) - 395481..396725 (+) 1245 WP_015042385.1 competence/damage-inducible protein A -
  DCF50_RS01900 (DCF50_p377) recA 396859..397899 (+) 1041 WP_015042386.1 recombinase RecA Machinery gene
  DCF50_RS01905 (DCF50_p378) - 397889..398419 (+) 531 WP_015042387.1 regulatory protein RecX -
  DCF50_RS01910 (DCF50_p379) rny 398669..400237 (+) 1569 WP_193352143.1 ribonuclease Y -
  DCF50_RS01915 (DCF50_p380) - 400528..401040 (+) 513 WP_015042389.1 hypothetical protein -
  DCF50_RS01920 (DCF50_p381) - 401074..401844 (+) 771 WP_015042390.1 TIGR00282 family metallophosphoesterase -
  DCF50_RS01925 (DCF50_p382) - 401998..402258 (+) 261 WP_015042391.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37195.56 Da        Isoelectric Point: 5.7319

>NTDB_id=54060 DCF50_RS01900 WP_015042386.1 396859..397899(+) (recA) [Dehalobacter sp. CF]
MATPDKLKALDIALSQIEKQFGKGAIMKLGEASDRMAVETISTGSLALDLALGVGGVPRGRVIEVYGPESSGKTTVTLHI
IAEAQKTGGVAAFIDAEHALDPVYARALGVNVDDLLVSQPDTGEQALEICEALVRSGAVDVVVIDSVAALVPRAEIEGEM
GDSHMGLHARLMSQALRKLTGCISKSHTCVIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVKKQDVIKQGQEIIG
NRTRVKVVKNKVAPPFNFADFDLVYGEGISREGSIVDMGSETGILMKSGAWYSYNGERLGQGRENVKDFLRQHPDIAAEI
ESKVRNLVLVSKDKTKGAQDDSMNDE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=54060 DCF50_RS01900 WP_015042386.1 396859..397899(+) (recA) [Dehalobacter sp. CF]
ATGGCTACTCCAGATAAACTGAAAGCATTGGATATTGCGCTGAGCCAAATTGAAAAGCAGTTTGGCAAGGGAGCGATTAT
GAAACTCGGCGAAGCTTCGGACAGAATGGCTGTTGAGACGATTTCAACAGGTTCATTGGCACTGGATTTGGCTTTAGGCG
TTGGCGGAGTTCCCAGAGGCCGGGTAATAGAGGTATATGGACCGGAGTCTTCGGGGAAAACCACCGTAACGCTGCATATT
ATTGCTGAGGCACAAAAAACAGGCGGCGTTGCAGCTTTTATTGATGCAGAGCATGCCCTTGACCCAGTATATGCCCGTGC
GCTGGGTGTGAATGTCGACGATCTGCTGGTTTCTCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCTGTGAAGCCCTTG
TCCGTAGCGGCGCGGTTGATGTCGTTGTTATTGACTCGGTGGCGGCACTCGTGCCACGGGCTGAAATCGAAGGGGAGATG
GGCGATTCCCATATGGGGCTGCATGCCCGTCTGATGTCCCAGGCGTTGCGCAAACTTACCGGGTGCATCAGTAAAAGCCA
TACCTGTGTCATCTTTATTAATCAGATCAGGGAGAAAGTCGGCGTGATGTTCGGCAACCCGGAGACGACGACCGGGGGAC
GGGCGCTGAAATTTTATGCTTCAGTCCGGCTGGAAGTCAAAAAGCAGGATGTCATCAAGCAGGGGCAGGAAATCATCGGC
AACCGGACTCGCGTAAAGGTCGTCAAAAATAAGGTTGCACCGCCGTTTAACTTTGCTGATTTCGACCTGGTTTATGGCGA
AGGGATATCCAGGGAAGGCAGTATTGTCGATATGGGATCGGAAACAGGTATCCTAATGAAATCGGGCGCCTGGTATTCCT
ACAATGGCGAAAGGCTTGGACAGGGAAGAGAGAATGTCAAGGACTTTCTGCGTCAGCATCCAGATATTGCTGCAGAGATT
GAGAGCAAAGTGCGCAATCTGGTTCTGGTCTCGAAAGACAAGACCAAGGGCGCTCAGGACGACAGCATGAATGATGAGTA
G

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K4LD43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.651

92.775

0.665
  recA Neisseria gonorrhoeae MS11

65.385

97.688

0.639
  recA Neisseria gonorrhoeae MS11

65.385

97.688

0.639
  recA Neisseria gonorrhoeae strain FA1090

65.385

97.688

0.639
  recA Latilactobacillus sakei subsp. sakei 23K

68

93.931

0.639
  recA Ralstonia pseudosolanacearum GMI1000

69.903

89.306

0.624
  recA Glaesserella parasuis strain SC1401

63.05

98.555

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

97.688

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.865

98.844

0.621
  recA Vibrio cholerae strain A1552

62.865

98.844

0.621
  recA Streptococcus mutans UA159

62.941

98.266

0.618
  recA Pseudomonas stutzeri DSM 10701

64.157

95.954

0.616
  recA Streptococcus mitis NCTC 12261

60.857

100

0.616
  recA Streptococcus mitis SK321

60.857

100

0.616
  recA Acinetobacter baylyi ADP1

62.13

97.688

0.607
  recA Streptococcus pyogenes NZ131

64.615

93.931

0.607
  recA Acinetobacter baumannii D1279779

63.303

94.509

0.598
  recA Streptococcus pneumoniae R6

63.19

94.22

0.595
  recA Streptococcus pneumoniae Rx1

63.19

94.22

0.595
  recA Streptococcus pneumoniae D39

63.19

94.22

0.595
  recA Streptococcus pneumoniae TIGR4

63.19

94.22

0.595
  recA Lactococcus lactis subsp. cremoris KW2

63.043

93.064

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.928

92.775

0.584
  recA Helicobacter pylori 26695

62.422

93.064

0.581
  recA Helicobacter pylori strain NCTC11637

62.422

93.064

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.656

94.22

0.581

Multiple sequence alignment