Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JWZ98_RS06785 Genome accession   NZ_CP070494
Coordinates   1434107..1435159 (+) Length   350 a.a.
NCBI ID   WP_033157268.1    Uniprot ID   A0A2N0VCX6
Organism   Methylomonas sp. EFPC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1429107..1440159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ98_RS06770 (JWZ98_06770) - 1431141..1431614 (-) 474 WP_033157264.1 hypothetical protein -
  JWZ98_RS06775 (JWZ98_06775) - 1431975..1432697 (+) 723 WP_205453731.1 hypothetical protein -
  JWZ98_RS06780 (JWZ98_06780) - 1432726..1434018 (+) 1293 WP_240348245.1 cobyrinate a,c-diamide synthase -
  JWZ98_RS06785 (JWZ98_06785) recA 1434107..1435159 (+) 1053 WP_033157268.1 recombinase RecA Machinery gene
  JWZ98_RS06790 (JWZ98_06790) - 1435122..1435622 (+) 501 WP_205453732.1 regulatory protein RecX -
  JWZ98_RS06795 (JWZ98_06795) - 1435652..1436089 (+) 438 WP_205453733.1 hypothetical protein -
  JWZ98_RS06800 (JWZ98_06800) - 1436150..1436461 (+) 312 WP_205453734.1 nucleotidyltransferase domain-containing protein -
  JWZ98_RS06805 (JWZ98_06805) - 1436451..1436789 (+) 339 WP_205453735.1 HepT-like ribonuclease domain-containing protein -
  JWZ98_RS06810 (JWZ98_06810) alaS 1436873..1439482 (+) 2610 WP_205453736.1 alanine--tRNA ligase -
  JWZ98_RS06815 (JWZ98_06815) - 1439535..1439726 (+) 192 WP_205453737.1 type II toxin-antitoxin system HicB family antitoxin -
  JWZ98_RS06820 (JWZ98_06820) - 1439726..1439905 (+) 180 WP_205453738.1 type II toxin-antitoxin system HicA family toxin -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37674.06 Da        Isoelectric Point: 4.9461

>NTDB_id=540201 JWZ98_RS06785 WP_033157268.1 1434107..1435159(+) (recA) [Methylomonas sp. EFPC1]
MDENKKKALGAALMQIEKQFGKGSVMRMGDVAASRDIEVVSTGSLSLDIALGVGGLPRGRIIEIYGPESSGKTTLTLQTI
AQMQKLGGTAAFVDAEHALDPIYAQKIGVNIDDLLVSQPDTGEQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGDMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGN
ETRVKVVKNKVAPPFKQADFEILYGEGVSFFGELVDLGVEFGFVQKSGSWYAYNNEKIGQGKDNAKQFLRDNPDKAAELE
KAIREKAFAKLASAPAAVSEDDDAEFVDGD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=540201 JWZ98_RS06785 WP_033157268.1 1434107..1435159(+) (recA) [Methylomonas sp. EFPC1]
ATGGACGAAAACAAGAAAAAGGCGCTGGGCGCCGCGTTGATGCAGATCGAAAAACAATTCGGCAAGGGCTCCGTGATGCG
GATGGGCGATGTCGCCGCCAGCCGCGACATCGAAGTCGTATCGACCGGCTCGCTGTCCTTGGATATTGCGCTGGGTGTCG
GCGGTTTGCCGCGCGGCCGGATTATCGAAATTTACGGACCGGAGTCGTCCGGTAAAACCACCTTGACGCTGCAAACCATC
GCCCAGATGCAAAAGTTGGGCGGCACGGCGGCATTCGTCGATGCCGAACACGCGCTGGATCCGATCTATGCGCAAAAGAT
CGGCGTCAATATCGACGATTTGTTGGTTTCGCAGCCGGATACCGGCGAACAAGCCCTGGAGATTACCGATATGCTGGTGC
GCTCCGGCGCGGTCGACATCGTGGTGGTCGACTCGGTGGCCGCTTTAACACCCAAGGCCGAAATCGAAGGCGATATGGGC
GACTCGCACATGGGTTTGCAAGCGCGCTTGATGTCGCAAGCCTTGCGCAAACTGACCGCCAATATCAAACGCTCGAACAC
CTTGGTGATTTTCATCAACCAGTTGCGGATGAAAATTGGGGTGATGTTTGGCAACCCGGAAACCACTACCGGCGGTAATG
CGCTGAAGTTTTATGCCTCGGTGCGTCTGGATATTCGCCGCATCGGCGCGATCAAGAAAGGCGACGAGGTGATCGGTAAC
GAGACCCGCGTCAAAGTGGTCAAAAACAAAGTGGCGCCGCCGTTCAAGCAAGCCGATTTCGAAATTCTGTATGGCGAAGG
CGTGTCCTTCTTCGGCGAACTGGTGGATTTAGGTGTGGAATTTGGCTTCGTCCAAAAGTCCGGTTCCTGGTATGCCTACA
ACAACGAGAAAATTGGCCAGGGCAAGGATAACGCCAAGCAGTTTTTGCGCGATAACCCGGACAAAGCGGCAGAACTGGAA
AAGGCCATCCGCGAAAAAGCCTTTGCCAAATTAGCGAGCGCGCCGGCGGCAGTCAGTGAAGACGACGACGCCGAGTTTGT
CGACGGCGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N0VCX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

73.099

97.714

0.714
  recA Acinetobacter baylyi ADP1

71.72

98

0.703
  recA Acinetobacter baumannii D1279779

69.741

99.143

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.846

92.857

0.686
  recA Vibrio cholerae strain A1552

73.846

92.857

0.686
  recA Glaesserella parasuis strain SC1401

71.131

96

0.683
  recA Ralstonia pseudosolanacearum GMI1000

75.484

88.571

0.669
  recA Neisseria gonorrhoeae MS11

70.988

92.571

0.657
  recA Neisseria gonorrhoeae MS11

70.988

92.571

0.657
  recA Neisseria gonorrhoeae strain FA1090

70.988

92.571

0.657
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.066

95.429

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.536

99.143

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

67.391

92

0.62
  recA Streptococcus mitis SK321

61.207

99.429

0.609
  recA Streptococcus mitis NCTC 12261

60.92

99.429

0.606
  recA Streptococcus mutans UA159

63.804

93.143

0.594
  recA Streptococcus pyogenes NZ131

63.11

93.714

0.591
  recA Streptococcus pneumoniae D39

63.19

93.143

0.589
  recA Streptococcus pneumoniae Rx1

63.19

93.143

0.589
  recA Streptococcus pneumoniae R6

63.19

93.143

0.589
  recA Streptococcus pneumoniae TIGR4

63.19

93.143

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

63.665

92

0.586
  recA Helicobacter pylori strain NCTC11637

61.963

93.143

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

94.286

0.574
  recA Helicobacter pylori 26695

61.656

93.143

0.574
  recA Lactococcus lactis subsp. cremoris KW2

61.111

92.571

0.566