Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JWZ97_RS18455 Genome accession   NZ_CP070491
Coordinates   4286060..4287103 (+) Length   347 a.a.
NCBI ID   WP_205432138.1    Uniprot ID   -
Organism   Methylococcus sp. EFPC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4281060..4292103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ97_RS18435 (JWZ97_18435) - 4281226..4282983 (-) 1758 WP_205432134.1 hybrid sensor histidine kinase/response regulator -
  JWZ97_RS18440 (JWZ97_18440) - 4282990..4283613 (-) 624 WP_205432135.1 response regulator -
  JWZ97_RS18445 (JWZ97_18445) - 4283930..4284706 (+) 777 WP_205432136.1 VPLPA-CTERM sorting domain-containing protein -
  JWZ97_RS18450 (JWZ97_18450) - 4284687..4285814 (+) 1128 WP_205432137.1 DUF3466 family protein -
  JWZ97_RS18455 (JWZ97_18455) recA 4286060..4287103 (+) 1044 WP_205432138.1 recombinase RecA Machinery gene
  JWZ97_RS18460 (JWZ97_18460) - 4287244..4287579 (+) 336 WP_240342395.1 regulatory protein RecX -
  JWZ97_RS18465 (JWZ97_18465) alaS 4287585..4290185 (+) 2601 WP_205432139.1 alanine--tRNA ligase -
  JWZ97_RS18470 (JWZ97_18470) - 4290208..4291437 (+) 1230 WP_205432140.1 aspartate kinase -
  JWZ97_RS18475 (JWZ97_18475) csrA 4291574..4291783 (+) 210 WP_205432141.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37060.32 Da        Isoelectric Point: 5.0615

>NTDB_id=540191 JWZ97_RS18455 WP_205432138.1 4286060..4287103(+) (recA) [Methylococcus sp. EFPC2]
MDENKKKALSAALSQIEKQFGKGSVMRMGDVAVHDIEVVPTGSLALDIALGCGGLPRGRIVEIYGPESSGKTTLTLEVIA
QAQKLGGVAAFVDAEHALDPAYAEKIGVDLDDLLVSQPDTGEQALEIADMLVRSGSVDVVVIDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKKSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKSGDEVIGNE
TKVKVVKNKVAPPFRNAEFEILYGEGVSHEGELVDLGVNLDILQKSGSWYSYAGDRVGQGKDNVRNYLKEHPEIANEIEA
KIREKALASSVPAPLKAGGRAPVEEES

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=540191 JWZ97_RS18455 WP_205432138.1 4286060..4287103(+) (recA) [Methylococcus sp. EFPC2]
ATGGACGAGAACAAGAAAAAGGCCCTGAGTGCCGCGCTTTCGCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACGTCGCCGTGCACGATATCGAGGTCGTTCCCACCGGTTCGCTGGCCCTGGACATCGCCTTGGGTTGCGGTG
GCTTGCCGCGCGGGCGCATCGTGGAAATCTACGGGCCGGAGTCGTCGGGCAAGACCACCCTGACGCTGGAGGTCATCGCC
CAGGCGCAGAAGCTGGGCGGCGTGGCGGCCTTCGTCGATGCCGAGCACGCCCTGGATCCGGCCTATGCGGAGAAGATAGG
CGTCGATCTGGACGACTTGCTGGTGTCCCAGCCGGATACCGGCGAGCAAGCTTTGGAAATCGCCGACATGCTGGTGCGTT
CCGGCAGCGTGGACGTGGTGGTCATCGACTCGGTGGCCGCGCTCACGCCCAAGGCCGAGATCGAGGGCGAAATGGGCGAT
TCCCACGTGGGCCTGCAGGCGCGTCTGATGTCGCAGGCCTTGCGCAAGCTGACGGCTAACATCAAGAAGTCGAACACCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAATCCGGAGACCACTACCGGCGGCAACGCAC
TCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCGCGATCAAGAGCGGCGACGAGGTGATCGGCAACGAG
ACCAAGGTCAAGGTGGTCAAGAACAAGGTGGCCCCGCCTTTCCGCAACGCCGAGTTCGAGATCCTCTACGGCGAAGGCGT
GTCGCACGAAGGCGAACTGGTCGATCTGGGCGTCAACCTGGACATCCTGCAAAAGTCGGGATCCTGGTACAGCTATGCCG
GCGACCGTGTCGGGCAGGGCAAGGACAACGTGCGCAACTACCTGAAAGAGCATCCGGAGATCGCCAACGAGATCGAGGCG
AAGATCCGTGAGAAAGCGCTGGCAAGCAGCGTCCCGGCTCCGCTGAAAGCGGGCGGCAGGGCTCCCGTCGAGGAAGAGAG
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.075

95.965

0.72
  recA Acinetobacter baylyi ADP1

75.152

95.101

0.715
  recA Acinetobacter baumannii D1279779

74.164

94.813

0.703
  recA Neisseria gonorrhoeae strain FA1090

75

93.372

0.7
  recA Neisseria gonorrhoeae MS11

75

93.372

0.7
  recA Neisseria gonorrhoeae MS11

75

93.372

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.089

94.236

0.689
  recA Vibrio cholerae strain A1552

73.089

94.236

0.689
  recA Glaesserella parasuis strain SC1401

71.045

96.542

0.686
  recA Ralstonia pseudosolanacearum GMI1000

76.375

89.049

0.68
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.769

95.965

0.66
  recA Bacillus subtilis subsp. subtilis str. 168

67.913

92.507

0.628
  recA Helicobacter pylori strain NCTC11637

62.717

99.712

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

93.372

0.622
  recA Helicobacter pylori 26695

62.428

99.712

0.622
  recA Streptococcus pyogenes NZ131

64.22

94.236

0.605
  recA Streptococcus pneumoniae Rx1

64

93.66

0.599
  recA Streptococcus pneumoniae D39

64

93.66

0.599
  recA Streptococcus pneumoniae R6

64

93.66

0.599
  recA Streptococcus pneumoniae TIGR4

64

93.66

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

95.101

0.597
  recA Streptococcus mutans UA159

63.385

93.66

0.594
  recA Streptococcus mitis NCTC 12261

63.467

93.084

0.591
  recA Streptococcus mitis SK321

63.158

93.084

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.994

92.507

0.573
  recA Lactococcus lactis subsp. cremoris KW2

61.61

93.084

0.573