Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JVB21_RS06520 Genome accession   NZ_CP070381
Coordinates   1294278..1295441 (-) Length   387 a.a.
NCBI ID   WP_205271710.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1289278..1300441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS06495 (JVB21_06495) - 1289901..1290419 (-) 519 WP_205271707.1 dithiol-disulfide isomerase -
  JVB21_RS06500 (JVB21_06500) - 1290619..1290933 (-) 315 WP_205272735.1 DUF2129 domain-containing protein -
  JVB21_RS06505 (JVB21_06505) - 1290917..1291300 (-) 384 WP_200407055.1 YlbF family regulator -
  JVB21_RS06510 (JVB21_06510) - 1291449..1292819 (+) 1371 WP_205271708.1 amino acid permease -
  JVB21_RS06515 (JVB21_06515) - 1292902..1294266 (+) 1365 WP_205271709.1 amino acid permease -
  JVB21_RS06520 (JVB21_06520) recA 1294278..1295441 (-) 1164 WP_205271710.1 recombinase RecA Machinery gene
  JVB21_RS06525 (JVB21_06525) mutM 1295620..1296444 (-) 825 WP_205271711.1 DNA-formamidopyrimidine glycosylase -
  JVB21_RS06530 (JVB21_06530) asnB 1296656..1298248 (-) 1593 WP_205271712.1 asparagine synthase B -
  JVB21_RS06535 (JVB21_06535) era 1298344..1299255 (-) 912 WP_003131632.1 GTPase Era -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 41284.01 Da        Isoelectric Point: 5.2668

>NTDB_id=539551 JVB21_RS06520 WP_205271710.1 1294278..1295441(-) (recA) [Lactococcus taiwanensis strain K_LL001]
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSV
AALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTQVGKETKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLKIAVDEGIIKKSGAWFAYNDEKIGQGA
EKAKAFLKEHQEIFDEIDHKIRSTHGLLGDAESVEETNDGTTAKTKTSKAKKTDSVESEEIELELED

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=539551 JVB21_RS06520 WP_205271710.1 1294278..1295441(-) (recA) [Lactococcus taiwanensis strain K_LL001]
TTGGCAACAAAGAAAAAAACAAATTTTGATGATATTACCAAAAAATATGGCGCTGAGCGTGACAAAGCTTTGGCAGATGC
ACTTGCTCTGATTGAAAAAGACTTTGGGAAAGGTTCACTTATGCGTCTTGGCGAAGCAGCCAACCAAAAAGTGTCAGTAG
TAAGTTCAGGCTCACTTGCACTTGATATTGCGCTTGGTGCAGGTGGTTATCCTAAAGGACGTATCGTTGAAATCTATGGA
CCAGAATCTTCTGGTAAAACAACAGTTGCGCTTCATGCCGTTGCAGCGGTTCAAAAAGAAGGGGGCATTGCAGCCTTTAT
CGATGCTGAAAATGCGCTTGACCCAGAATATGCAAAAGCGCTCGGTGTCAATATCGATGAACTTTTACTTTCACAACCAG
ACTATGGTGAACAAGGGCTTCAAATTGCTGAAAAATTGATTACCTCTGGTGCAGTTGACTTGGTTGTTATTGACTCAGTT
GCAGCTTTGGTACCTAAAGCCGAAATTGACGGTGAAATTGGTGACAGTTCAGTTGGGCTTCAAGCTCGTATGATGTCACA
AGCCATGCGTAAACTTGCAGGACATATTAATAAAACAAAAACAACAGCTATTTTCATCAACCAATTGCGTGAAAAAGTTG
GGGTTATGTTTGGCTCGCCAGAAACAACACCTGGTGGTCGTGCCTTGAAATTCTATGCATCTGTACGTCTTGATGTTCGC
GGATCAACAAAGATTGAAGAAGGGTCTGGCGATAATAAGACTCAAGTGGGTAAAGAAACAAAAATCAAAGTTGTAAAAAA
TAAAGTCGCTCCACCATTCAAAGTCGCATTAGTTGATATTATGTTTGGTGAAGGAATCTCAAAAACAGGTGAATTACTAA
AAATTGCTGTTGATGAGGGGATTATCAAGAAATCAGGGGCTTGGTTTGCTTACAACGATGAGAAAATTGGTCAAGGAGCT
GAAAAAGCTAAAGCATTCCTCAAGGAACATCAAGAAATTTTTGATGAAATCGACCACAAAATTCGTTCTACACATGGTCT
CTTAGGCGATGCAGAGAGTGTAGAGGAGACGAACGATGGGACAACTGCTAAAACGAAAACCTCTAAAGCTAAAAAGACTG
ATTCAGTAGAATCAGAAGAAATTGAACTAGAACTTGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

96.023

90.956

0.873
  recA Streptococcus pneumoniae Rx1

75.844

99.483

0.755
  recA Streptococcus pneumoniae D39

75.844

99.483

0.755
  recA Streptococcus pneumoniae R6

75.844

99.483

0.755
  recA Streptococcus pneumoniae TIGR4

75.844

99.483

0.755
  recA Streptococcus mitis NCTC 12261

75.844

99.483

0.755
  recA Streptococcus mitis SK321

74.805

99.483

0.744
  recA Streptococcus mutans UA159

73.698

99.225

0.731
  recA Streptococcus pyogenes NZ131

78.674

89.664

0.705
  recA Latilactobacillus sakei subsp. sakei 23K

68.085

85.013

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

66.364

85.271

0.566
  recA Glaesserella parasuis strain SC1401

58.382

89.406

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

85.013

0.522
  recA Vibrio cholerae strain A1552

61.92

83.463

0.517
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

83.463

0.517
  recA Neisseria gonorrhoeae strain FA1090

59.639

85.788

0.512
  recA Neisseria gonorrhoeae MS11

59.639

85.788

0.512
  recA Neisseria gonorrhoeae MS11

59.639

85.788

0.512
  recA Ralstonia pseudosolanacearum GMI1000

59.517

85.53

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.967

85.013

0.501
  recA Helicobacter pylori strain NCTC11637

58.663

85.013

0.499
  recA Helicobacter pylori 26695

58.663

85.013

0.499
  recA Acinetobacter baumannii D1279779

59.752

83.463

0.499
  recA Acinetobacter baylyi ADP1

59.752

83.463

0.499
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.443

83.463

0.496
  recA Pseudomonas stutzeri DSM 10701

58.951

83.721

0.494