Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JWJ88_RS02165 Genome accession   NZ_CP070368
Coordinates   436707..437777 (+) Length   356 a.a.
NCBI ID   WP_205294483.1    Uniprot ID   -
Organism   Paracoccus methylovorus strain H4-D09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 431707..442777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWJ88_RS02145 (JWJ88_02145) - 431738..432535 (+) 798 WP_205294480.1 hypothetical protein -
  JWJ88_RS02150 (JWJ88_02150) - 432611..433762 (+) 1152 WP_205294481.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  JWJ88_RS02155 (JWJ88_02155) - 433819..435861 (+) 2043 WP_205294482.1 ATP-binding protein -
  JWJ88_RS02160 (JWJ88_02160) - 435888..436472 (-) 585 WP_205295096.1 sulfotransferase family 2 domain-containing protein -
  JWJ88_RS02165 (JWJ88_02165) recA 436707..437777 (+) 1071 WP_205294483.1 recombinase RecA Machinery gene
  JWJ88_RS02170 (JWJ88_02170) alaS 437998..440652 (+) 2655 WP_205294484.1 alanine--tRNA ligase -
  JWJ88_RS02175 (JWJ88_02175) - 440652..440942 (+) 291 WP_205294485.1 DUF1330 domain-containing protein -
  JWJ88_RS02180 (JWJ88_02180) - 441020..441241 (-) 222 WP_205294486.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38363.62 Da        Isoelectric Point: 4.8856

>NTDB_id=539501 JWJ88_RS02165 WP_205294483.1 436707..437777(+) (recA) [Paracoccus methylovorus strain H4-D09]
MAGATLFDMNDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAEIESTSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSLVVIDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GSIKDRDEVIGNATRVKVVKNKVAPPFRQVEFDITYGEGISKVGELIDLGIKAGVVDKSGSWYSYGDERIGQGRENAKQY
LRDHPEIAYTIEDKIRASHGLDFGSSEDSDEVMTED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=539501 JWJ88_RS02165 WP_205294483.1 436707..437777(+) (recA) [Paracoccus methylovorus strain H4-D09]
ATGGCAGGGGCAACACTTTTCGACATGAACGACAAGCGATCCGCAGATAAGCAGAAGGCGCTGGACAGCGCACTGGCCCA
GATTGAACGGCAGTTCGGCAAGGGCTCCATCATGAAGCTGGGCGCTGATAATCCGGTGGCCGAGATCGAGTCGACCTCGA
CCGGATCGCTTGGGCTTGATATTGCGTTGGGGATCGGCGGCCTGCCCAAAGGCAGGATCATCGAGATCTTTGGACCAGAA
AGTTCGGGCAAGACCACTCTGACGCTGCATGTCGTAGCAGAGGAACAAAAAAAGGGGGGCGTTTGCGCCTTCGTCGATGC
CGAACATGCGCTGGACCCGCAATATGCCAAGAAGCTGGGCGTCAATCTGGACGAGTTGCTGATCAGTCAGCCCGACACGG
GCGAGCAGGCGCTTGAGATCGTCGATACCTTGGTGCGTTCGGGCGCGGTCAGTCTGGTCGTGATCGATTCGGTGGCGGCG
CTGACGCCCAAGTCCGAGATCGAGGGCGATATGGGCGACATGCAGATGGGCAGTCAGGCCCGGCTGATGAGCCAAGCCAT
GCGCAAGCTGACGGCCAGCATCGGGCGGTCAAACTGCATGGTGATTTTTATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGTAGTCCCGAGACGACAACCGGCGGCAATGCCTTGAAGTTCTACGCTTCGGTTCGCCTGGATATTCGTCGCATC
GGTTCCATCAAGGATCGGGATGAGGTGATCGGGAACGCTACCCGCGTGAAGGTGGTCAAGAATAAGGTCGCCCCGCCGTT
TCGTCAGGTCGAATTCGATATCACATATGGCGAAGGTATTTCGAAGGTCGGCGAGCTGATCGATTTGGGCATCAAGGCGG
GCGTGGTCGACAAGTCCGGCTCGTGGTATTCCTATGGCGACGAGCGTATCGGTCAGGGCCGCGAGAATGCCAAGCAGTAT
CTGCGCGATCATCCTGAAATCGCCTATACGATTGAGGACAAGATCCGGGCCAGTCACGGACTGGATTTCGGTTCTTCCGA
GGACAGCGACGAGGTAATGACCGAAGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.171

92.135

0.674
  recA Neisseria gonorrhoeae strain FA1090

68.862

93.82

0.646
  recA Neisseria gonorrhoeae MS11

68.862

93.82

0.646
  recA Neisseria gonorrhoeae MS11

68.862

93.82

0.646
  recA Glaesserella parasuis strain SC1401

70.938

89.888

0.638
  recA Pseudomonas stutzeri DSM 10701

70.186

90.449

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.093

90.169

0.632
  recA Vibrio cholerae strain A1552

70.093

90.169

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.588

95.506

0.626
  recA Acinetobacter baylyi ADP1

69.159

90.169

0.624
  recA Acinetobacter baumannii D1279779

68.536

90.169

0.618
  recA Helicobacter pylori 26695

65.569

93.82

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

66.159

92.135

0.61
  recA Helicobacter pylori strain NCTC11637

64.97

93.82

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.337

91.573

0.598
  recA Streptococcus pneumoniae D39

60.588

95.506

0.579
  recA Streptococcus pneumoniae Rx1

60.588

95.506

0.579
  recA Streptococcus pneumoniae R6

60.588

95.506

0.579
  recA Streptococcus pneumoniae TIGR4

60.588

95.506

0.579
  recA Streptococcus mitis NCTC 12261

60.294

95.506

0.576
  recA Streptococcus mitis SK321

60

95.506

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.706

95.506

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

59.76

93.539

0.559
  recA Streptococcus mutans UA159

60

92.697

0.556
  recA Streptococcus pyogenes NZ131

60.182

92.416

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

91.011

0.542