Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JVX97_RS00220 Genome accession   NZ_CP070350
Coordinates   45715..46740 (+) Length   341 a.a.
NCBI ID   WP_046674918.1    Uniprot ID   -
Organism   Sphingobacterium siyangense strain PDNC006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 40715..51740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX97_RS00205 (JVX97_00205) - 42910..44535 (+) 1626 WP_120333153.1 S8 family serine peptidase -
  JVX97_RS00210 (JVX97_00210) - 44616..44807 (+) 192 WP_147420848.1 hypothetical protein -
  JVX97_RS00215 (JVX97_00215) nth 44970..45647 (+) 678 WP_120333199.1 endonuclease III -
  JVX97_RS00220 (JVX97_00220) recA 45715..46740 (+) 1026 WP_046674918.1 recombinase RecA Machinery gene
  JVX97_RS00225 (JVX97_00225) - 46933..47700 (+) 768 WP_120333151.1 endonuclease/exonuclease/phosphatase family protein -
  JVX97_RS00230 (JVX97_00230) - 47720..48901 (+) 1182 WP_120333150.1 metallophosphoesterase family protein -
  JVX97_RS00235 (JVX97_00235) pruA 48965..50602 (-) 1638 WP_120333149.1 L-glutamate gamma-semialdehyde dehydrogenase -
  JVX97_RS00240 (JVX97_00240) msrA 50771..51430 (-) 660 WP_120333148.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36745.18 Da        Isoelectric Point: 4.7498

>NTDB_id=539330 JVX97_RS00220 WP_046674918.1 45715..46740(+) (recA) [Sphingobacterium siyangense strain PDNC006]
MSNTDKLKALQLTLDKLEKNFGKGSIMKLGDTAVEPIEAISTGSLGLDIALGIGGVPKGRIIEIYGPESSGKTTLATHIV
AEAQKKGGIAAIIDAEHAFDKYYAQKLGVDVENLLISQPDNGEQGLEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMG
DSKMGLQARLMSQALRKLTGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGN
RVKVKIVKNKVAPPFRIAEFDIIFGEGISKVGEIIDLGVEYGIIKKAGSWFSYGETKLGQGRDAVKALLFDNPDLMDELE
AKIRAEVTGEDPMLNIEENED

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=539330 JVX97_RS00220 WP_046674918.1 45715..46740(+) (recA) [Sphingobacterium siyangense strain PDNC006]
ATGAGCAACACAGATAAACTAAAAGCTTTACAGCTGACGTTAGATAAATTGGAAAAGAACTTTGGAAAAGGTTCAATTAT
GAAATTAGGTGATACTGCTGTTGAGCCGATCGAAGCTATTTCTACAGGATCTCTAGGCTTGGATATCGCCTTAGGAATTG
GCGGTGTACCAAAAGGCCGTATCATTGAAATATATGGACCTGAATCTTCAGGTAAAACTACCTTAGCAACGCACATTGTT
GCCGAAGCACAAAAAAAAGGCGGTATTGCAGCAATCATTGATGCTGAGCATGCTTTTGATAAATATTACGCTCAAAAATT
AGGCGTAGATGTAGAAAATTTATTGATTTCTCAACCAGATAATGGTGAGCAAGGTTTAGAAATTGCTGATAACCTAATCC
GTTCTGGTGCAATCGACGTTATTGTTATTGACTCCGTTGCGGCTTTGGTGCCAAAAGGTGAGATCGAAGGCGAAATGGGT
GATTCTAAAATGGGGCTTCAAGCTCGTTTGATGTCACAAGCTTTACGTAAGTTGACAGGTACAATTTCAAAAACAAACTG
TTGTTGTATTTTCATCAACCAATTGCGTGAAAAAATTGGTGTGATGTTTGGCAACCCAGAAACAACAACTGGTGGTAATG
CATTAAAATTCTACGCTTCTGTACGTTTAGATATCCGTCGTACATCACAAATCAAAGATTCTGATGAAGTATCGGGTAAC
CGCGTAAAAGTGAAGATTGTAAAAAATAAAGTTGCACCTCCGTTCCGCATAGCGGAATTTGATATCATCTTTGGTGAAGG
TATCTCTAAAGTAGGTGAAATCATTGATCTAGGTGTTGAATATGGTATTATTAAAAAAGCAGGCTCTTGGTTTAGCTATG
GTGAGACCAAATTAGGACAAGGTCGAGATGCTGTTAAAGCCTTATTATTCGACAATCCAGATTTAATGGACGAACTTGAA
GCTAAAATCCGTGCTGAAGTGACAGGAGAAGATCCAATGCTTAACATCGAGGAAAACGAAGACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

70.997

97.067

0.689
  recA Ralstonia pseudosolanacearum GMI1000

69.085

92.962

0.642
  recA Neisseria gonorrhoeae strain FA1090

67.081

94.428

0.633
  recA Neisseria gonorrhoeae MS11

67.081

94.428

0.633
  recA Neisseria gonorrhoeae MS11

67.081

94.428

0.633
  recA Acinetobacter baumannii D1279779

62.832

99.413

0.625
  recA Helicobacter pylori strain NCTC11637

65.031

95.601

0.622
  recA Helicobacter pylori 26695

64.724

95.601

0.619
  recA Glaesserella parasuis strain SC1401

66.144

93.548

0.619
  recA Acinetobacter baylyi ADP1

65.015

94.721

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

94.135

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.396

94.721

0.61
  recA Pseudomonas stutzeri DSM 10701

63.777

94.721

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.479

97.947

0.592
  recA Vibrio cholerae strain A1552

60.479

97.947

0.592
  recA Streptococcus mitis NCTC 12261

61.162

95.894

0.587
  recA Streptococcus pyogenes NZ131

61.42

95.015

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

95.308

0.584
  recA Streptococcus pneumoniae Rx1

61.043

95.601

0.584
  recA Streptococcus pneumoniae TIGR4

61.043

95.601

0.584
  recA Streptococcus pneumoniae D39

61.043

95.601

0.584
  recA Streptococcus pneumoniae R6

61.043

95.601

0.584
  recA Lactococcus lactis subsp. cremoris KW2

61.801

94.428

0.584
  recA Streptococcus mitis SK321

60.856

95.894

0.584
  recA Streptococcus mutans UA159

59.816

95.601

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.716

95.015

0.548