Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C380_RS23285 Genome accession   NC_018708
Coordinates   5065946..5067022 (-) Length   358 a.a.
NCBI ID   WP_015016298.1    Uniprot ID   -
Organism   Acidovorax sp. KKS102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5060946..5072022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C380_RS23260 (C380_23295) - 5061310..5061996 (-) 687 WP_015016293.1 TerC family protein -
  C380_RS23265 (C380_23300) sucD 5062141..5063037 (-) 897 WP_015016294.1 succinate--CoA ligase subunit alpha -
  C380_RS23270 (C380_23305) sucC 5063053..5064213 (-) 1161 WP_015016295.1 ADP-forming succinate--CoA ligase subunit beta -
  C380_RS23275 (C380_23310) argC 5064417..5065349 (+) 933 WP_015016296.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  C380_RS23280 (C380_23315) recX 5065403..5065861 (-) 459 WP_015016297.1 recombination regulator RecX -
  C380_RS23285 (C380_23320) recA 5065946..5067022 (-) 1077 WP_015016298.1 recombinase RecA Machinery gene
  C380_RS23290 (C380_23325) - 5067162..5067683 (+) 522 WP_015016299.1 MarR family winged helix-turn-helix transcriptional regulator -
  C380_RS23295 (C380_23330) - 5067656..5068603 (-) 948 WP_043565806.1 LysR substrate-binding domain-containing protein -
  C380_RS23300 (C380_23335) - 5068713..5069678 (+) 966 WP_015016301.1 tripartite tricarboxylate transporter substrate binding protein -
  C380_RS23305 (C380_23340) - 5069821..5070756 (+) 936 WP_015016302.1 N-formylglutamate amidohydrolase -
  C380_RS23310 (C380_23345) - 5070884..5071558 (+) 675 WP_015016303.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38059.78 Da        Isoelectric Point: 4.9571

>NTDB_id=53904 C380_RS23285 WP_015016298.1 5065946..5067022(-) (recA) [Acidovorax sp. KKS102]
MDVAVKGTNPALPVNTEKAKALAAALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP
ESSGKTTLTLQVVAEMQKQGGTCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIIVDSVA
ALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR
TGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKVIEKSGAWYAYNGEKIGQGRDNARE
FLRENPDLAREIENKVREGLGIALLPGALQAPAAAADE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=53904 C380_RS23285 WP_015016298.1 5065946..5067022(-) (recA) [Acidovorax sp. KKS102]
ATGGACGTCGCAGTCAAAGGCACCAACCCCGCATTGCCAGTGAACACCGAAAAGGCCAAGGCCCTGGCCGCCGCGCTCGC
CCAGATCGAGAAGCAATTTGGCAAGGGCACGATCATGCGCCTGGGTGAAGGCGAGGTGATCGAGGACATCCAGGTGGTCT
CCACCGGCTCCTTGGGCCTGGACATTGCCCTGGGCGTGGGCGGCCTGCCCCGCGGCCGTGTGGTCGAGATCTACGGCCCG
GAATCGTCGGGCAAGACCACGCTCACGCTGCAGGTGGTGGCCGAGATGCAAAAGCAAGGCGGCACCTGCGCGTTTGTCGA
TGCCGAGCACGCCCTCGACGTGCAATACGCCCAGAAGCTGGGCGTGCAGCTGTCCGACCTGCTCATCAGCCAGCCCGACA
CCGGCGAACAAGCCCTGGAAATCGTGGATAGCCTCGTTCGTTCCGGGGCCGTGGACCTGATCATCGTGGACTCGGTGGCC
GCACTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGATGCCCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGC
GCTGCGCAAACTCACCGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCG
TGATGTTCGGCTCGCCCGAAACGACGACCGGCGGCAATGCGCTGAAGTTCTATGCCTCGGTGCGCCTGGATATCCGCCGC
ACCGGCACCATCAAGAAGGGCGACGAAGCCATCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTGAGCCCGCC
CTTCAAGACGGCCGAGTTCGACATCCTGTTTGGCGAAGGCATCAGCCGCGAAGGCGAGATCATCGACATGGGCGTGAACG
CCAAGGTCATCGAAAAGAGCGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGTCAGGGCCGTGACAACGCCCGCGAG
TTTTTGCGTGAAAACCCCGACCTGGCCCGCGAGATCGAGAACAAGGTGCGCGAAGGGCTGGGCATTGCGCTGCTGCCTGG
CGCACTGCAGGCTCCAGCAGCGGCTGCCGACGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.35

87.709

0.749
  recA Pseudomonas stutzeri DSM 10701

73.089

91.341

0.668
  recA Vibrio cholerae strain A1552

67.529

97.207

0.656
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.529

97.207

0.656
  recA Neisseria gonorrhoeae MS11

72.531

90.503

0.656
  recA Neisseria gonorrhoeae MS11

72.531

90.503

0.656
  recA Neisseria gonorrhoeae strain FA1090

72.531

90.503

0.656
  recA Acinetobacter baumannii D1279779

68.546

94.134

0.645
  recA Glaesserella parasuis strain SC1401

71.296

90.503

0.645
  recA Acinetobacter baylyi ADP1

70.336

91.341

0.642
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.069

92.458

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.364

92.179

0.612
  recA Helicobacter pylori strain NCTC11637

63.746

92.458

0.589
  recA Helicobacter pylori 26695

63.746

92.458

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

63.939

92.179

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

91.341

0.581
  recA Streptococcus pyogenes NZ131

59.538

96.648

0.575
  recA Lactococcus lactis subsp. cremoris KW2

61.515

92.179

0.567
  recA Streptococcus mutans UA159

60.909

92.179

0.561
  recA Streptococcus pneumoniae Rx1

60.303

92.179

0.556
  recA Streptococcus pneumoniae D39

60.303

92.179

0.556
  recA Streptococcus pneumoniae R6

60.303

92.179

0.556
  recA Streptococcus pneumoniae TIGR4

60.303

92.179

0.556
  recA Streptococcus mitis SK321

60

92.179

0.553
  recA Streptococcus mitis NCTC 12261

60

92.179

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

89.665

0.542

Multiple sequence alignment